diff --git a/libexec/pyenv-versions b/libexec/pyenv-versions
index 5944da00..6a422147 100755
--- a/libexec/pyenv-versions
+++ b/libexec/pyenv-versions
@@ -111,6 +111,7 @@ for path in "$versions_dir"/*; do
     if [ -n "$skip_aliases" ] && [ -L "$path" ]; then
       target="$(realpath "$path")"
       [ "${target%/*}" != "$versions_dir" ] || continue
+      [ "${target%/*/envs/*}" != "$versions_dir" ] || continue
     fi
     print_version "${path##*/}"
     # virtual environments created by anaconda/miniconda