From 6e3fd0effb630cb7f58b5af34921e7bd05543d3c Mon Sep 17 00:00:00 2001
From: Christopher Hoskin <christopher.hoskin@gmail.com>
Date: Fri, 11 Jan 2019 10:18:37 +0000
Subject: [PATCH 1/7] Bump logger to v1.5.9 and settings to v1.1.0

---
 services/clsi/npm-shrinkwrap.json | 471 +++++++++++++++++++++++-------
 services/clsi/package.json        |   4 +-
 2 files changed, 360 insertions(+), 115 deletions(-)

diff --git a/services/clsi/npm-shrinkwrap.json b/services/clsi/npm-shrinkwrap.json
index 4853442cd9..48e31b1101 100644
--- a/services/clsi/npm-shrinkwrap.json
+++ b/services/clsi/npm-shrinkwrap.json
@@ -118,6 +118,28 @@
       "from": "@sindresorhus/is@>=0.13.0 <0.14.0",
       "resolved": "https://registry.npmjs.org/@sindresorhus/is/-/is-0.13.0.tgz"
     },
+    "@sinonjs/commons": {
+      "version": "1.3.0",
+      "from": "@sinonjs/commons@>=1.2.0 <2.0.0",
+      "resolved": "https://registry.npmjs.org/@sinonjs/commons/-/commons-1.3.0.tgz",
+      "dependencies": {
+        "type-detect": {
+          "version": "4.0.8",
+          "from": "type-detect@4.0.8",
+          "resolved": "https://registry.npmjs.org/type-detect/-/type-detect-4.0.8.tgz"
+        }
+      }
+    },
+    "@sinonjs/formatio": {
+      "version": "3.1.0",
+      "from": "@sinonjs/formatio@>=3.1.0 <4.0.0",
+      "resolved": "https://registry.npmjs.org/@sinonjs/formatio/-/formatio-3.1.0.tgz"
+    },
+    "@sinonjs/samsam": {
+      "version": "3.0.2",
+      "from": "@sinonjs/samsam@>=3.0.2 <4.0.0",
+      "resolved": "https://registry.npmjs.org/@sinonjs/samsam/-/samsam-3.0.2.tgz"
+    },
     "@types/caseless": {
       "version": "0.12.1",
       "from": "@types/caseless@*",
@@ -218,19 +240,16 @@
       "version": "0.1.16",
       "from": "argparse@>=0.1.11 <0.2.0",
       "resolved": "https://registry.npmjs.org/argparse/-/argparse-0.1.16.tgz",
-      "dev": true,
       "dependencies": {
         "underscore": {
           "version": "1.7.0",
           "from": "underscore@>=1.7.0 <1.8.0",
-          "resolved": "https://registry.npmjs.org/underscore/-/underscore-1.7.0.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/underscore/-/underscore-1.7.0.tgz"
         },
         "underscore.string": {
           "version": "2.4.0",
           "from": "underscore.string@>=2.4.0 <2.5.0",
-          "resolved": "https://registry.npmjs.org/underscore.string/-/underscore.string-2.4.0.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/underscore.string/-/underscore.string-2.4.0.tgz"
         }
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@@ -239,6 +258,11 @@
       "from": "array-flatten@1.1.1",
       "resolved": "https://registry.npmjs.org/array-flatten/-/array-flatten-1.1.1.tgz"
     },
+    "array-from": {
+      "version": "2.1.1",
+      "from": "array-from@>=2.1.1 <3.0.0",
+      "resolved": "https://registry.npmjs.org/array-from/-/array-from-2.1.1.tgz"
+    },
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@@ -421,6 +445,11 @@
       "resolved": "https://registry.npmjs.org/chalk/-/chalk-0.3.0.tgz",
       "dev": true
     },
+    "check-error": {
+      "version": "1.0.2",
+      "from": "check-error@>=1.0.2 <2.0.0",
+      "resolved": "https://registry.npmjs.org/check-error/-/check-error-1.0.2.tgz"
+    },
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       "from": "chownr@>=1.0.1 <2.0.0",
@@ -444,14 +473,12 @@
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       "from": "coffee-script@1.6.0",
-      "resolved": "https://registry.npmjs.org/coffee-script/-/coffee-script-1.6.0.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/coffee-script/-/coffee-script-1.6.0.tgz"
     },
     "colors": {
       "version": "0.6.2",
       "from": "colors@>=0.6.2 <0.7.0",
-      "resolved": "https://registry.npmjs.org/colors/-/colors-0.6.2.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/colors/-/colors-0.6.2.tgz"
     },
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@@ -461,8 +488,7 @@
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       "from": "commander@2.0.0",
-      "resolved": "http://registry.npmjs.org/commander/-/commander-2.0.0.tgz",
-      "dev": true
+      "resolved": "http://registry.npmjs.org/commander/-/commander-2.0.0.tgz"
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@@ -527,8 +553,7 @@
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-      "resolved": "https://registry.npmjs.org/dateformat/-/dateformat-1.0.2-1.2.3.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/dateformat/-/dateformat-1.0.2-1.2.3.tgz"
     },
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@@ -579,8 +604,7 @@
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       "from": "diff@1.0.7",
-      "resolved": "https://registry.npmjs.org/diff/-/diff-1.0.7.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/diff/-/diff-1.0.7.tgz"
     },
     "docker-modem": {
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@@ -689,14 +713,12 @@
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-      "resolved": "https://registry.npmjs.org/escape-string-regexp/-/escape-string-regexp-1.0.5.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/escape-string-regexp/-/escape-string-regexp-1.0.5.tgz"
     },
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       "version": "1.0.4",
       "from": "esprima@>=1.0.2 <1.1.0",
-      "resolved": "https://registry.npmjs.org/esprima/-/esprima-1.0.4.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/esprima/-/esprima-1.0.4.tgz"
     },
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       "version": "1.8.1",
@@ -706,14 +728,12 @@
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-      "resolved": "https://registry.npmjs.org/eventemitter2/-/eventemitter2-0.4.14.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/eventemitter2/-/eventemitter2-0.4.14.tgz"
     },
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       "version": "0.1.2",
       "from": "exit@>=0.1.1 <0.2.0",
-      "resolved": "https://registry.npmjs.org/exit/-/exit-0.1.2.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/exit/-/exit-0.1.2.tgz"
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@@ -768,31 +788,26 @@
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           "from": "glob@>=3.2.9 <3.3.0",
-          "resolved": "https://registry.npmjs.org/glob/-/glob-3.2.11.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/glob/-/glob-3.2.11.tgz"
         },
         "lodash": {
           "version": "2.4.2",
           "from": "lodash@>=2.4.1 <2.5.0",
-          "resolved": "https://registry.npmjs.org/lodash/-/lodash-2.4.2.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/lodash/-/lodash-2.4.2.tgz"
         },
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           "version": "2.7.3",
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-          "resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-2.7.3.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-2.7.3.tgz"
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           "version": "0.3.0",
           "from": "minimatch@>=0.3.0 <0.4.0",
-          "resolved": "https://registry.npmjs.org/minimatch/-/minimatch-0.3.0.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/minimatch/-/minimatch-0.3.0.tgz"
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@@ -890,11 +905,15 @@
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       "resolved": "https://registry.npmjs.org/generic-pool/-/generic-pool-3.4.2.tgz"
     },
+    "get-func-name": {
+      "version": "2.0.0",
+      "from": "get-func-name@>=2.0.0 <3.0.0",
+      "resolved": "https://registry.npmjs.org/get-func-name/-/get-func-name-2.0.0.tgz"
+    },
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       "version": "0.1.0",
       "from": "getobject@>=0.1.0 <0.2.0",
-      "resolved": "https://registry.npmjs.org/getobject/-/getobject-0.1.0.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/getobject/-/getobject-0.1.0.tgz"
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@@ -931,80 +950,67 @@
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       "from": "growl@1.7.x",
-      "resolved": "https://registry.npmjs.org/growl/-/growl-1.7.0.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/growl/-/growl-1.7.0.tgz"
     },
     "grunt": {
       "version": "0.4.5",
       "from": "grunt@>=0.4.2 <0.5.0",
       "resolved": "https://registry.npmjs.org/grunt/-/grunt-0.4.5.tgz",
-      "dev": true,
       "dependencies": {
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           "from": "async@>=0.1.22 <0.2.0",
-          "resolved": "https://registry.npmjs.org/async/-/async-0.1.22.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/async/-/async-0.1.22.tgz"
         },
         "coffee-script": {
           "version": "1.3.3",
           "from": "coffee-script@>=1.3.3 <1.4.0",
-          "resolved": "https://registry.npmjs.org/coffee-script/-/coffee-script-1.3.3.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/coffee-script/-/coffee-script-1.3.3.tgz"
         },
         "glob": {
           "version": "3.1.21",
           "from": "glob@>=3.1.21 <3.2.0",
-          "resolved": "https://registry.npmjs.org/glob/-/glob-3.1.21.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/glob/-/glob-3.1.21.tgz"
         },
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           "version": "1.2.3",
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-          "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-1.2.3.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-1.2.3.tgz"
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           "version": "0.2.11",
           "from": "iconv-lite@>=0.2.11 <0.3.0",
-          "resolved": "https://registry.npmjs.org/iconv-lite/-/iconv-lite-0.2.11.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/iconv-lite/-/iconv-lite-0.2.11.tgz"
         },
         "inherits": {
           "version": "1.0.2",
           "from": "inherits@>=1.0.0 <2.0.0",
-          "resolved": "https://registry.npmjs.org/inherits/-/inherits-1.0.2.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/inherits/-/inherits-1.0.2.tgz"
         },
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           "version": "0.9.2",
           "from": "lodash@>=0.9.2 <0.10.0",
-          "resolved": "https://registry.npmjs.org/lodash/-/lodash-0.9.2.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/lodash/-/lodash-0.9.2.tgz"
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-          "resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-2.7.3.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-2.7.3.tgz"
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-          "resolved": "https://registry.npmjs.org/minimatch/-/minimatch-0.2.14.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/minimatch/-/minimatch-0.2.14.tgz"
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-          "resolved": "https://registry.npmjs.org/nopt/-/nopt-1.0.10.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/nopt/-/nopt-1.0.10.tgz"
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-          "resolved": "https://registry.npmjs.org/rimraf/-/rimraf-2.2.8.tgz",
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+          "resolved": "https://registry.npmjs.org/rimraf/-/rimraf-2.2.8.tgz"
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@@ -1012,13 +1018,11 @@
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           "from": "lodash@>=2.4.1 <2.5.0",
-          "resolved": "https://registry.npmjs.org/lodash/-/lodash-2.4.2.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/lodash/-/lodash-2.4.2.tgz"
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@@ -1060,19 +1064,16 @@
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-      "dev": true,
       "dependencies": {
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           "from": "lodash@>=2.4.1 <2.5.0",
-          "resolved": "https://registry.npmjs.org/lodash/-/lodash-2.4.2.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/lodash/-/lodash-2.4.2.tgz"
         },
         "underscore.string": {
           "version": "2.3.3",
           "from": "underscore.string@>=2.3.3 <2.4.0",
-          "resolved": "https://registry.npmjs.org/underscore.string/-/underscore.string-2.3.3.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/underscore.string/-/underscore.string-2.3.3.tgz"
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@@ -1080,19 +1081,16 @@
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           "version": "2.4.2",
           "from": "lodash@>=2.4.1 <2.5.0",
-          "resolved": "https://registry.npmjs.org/lodash/-/lodash-2.4.2.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/lodash/-/lodash-2.4.2.tgz"
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           "version": "2.3.3",
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-          "resolved": "https://registry.npmjs.org/underscore.string/-/underscore.string-2.3.3.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/underscore.string/-/underscore.string-2.3.3.tgz"
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@@ -1100,19 +1098,16 @@
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-      "dev": true,
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           "from": "async@>=0.1.22 <0.2.0",
-          "resolved": "https://registry.npmjs.org/async/-/async-0.1.22.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/async/-/async-0.1.22.tgz"
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           "from": "lodash@>=0.9.2 <0.10.0",
-          "resolved": "https://registry.npmjs.org/lodash/-/lodash-0.9.2.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/lodash/-/lodash-0.9.2.tgz"
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@@ -1192,6 +1187,18 @@
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       "resolved": "https://registry.npmjs.org/har-validator/-/har-validator-5.1.3.tgz"
     },
+    "has-ansi": {
+      "version": "0.1.0",
+      "from": "has-ansi@>=0.1.0 <0.2.0",
+      "resolved": "https://registry.npmjs.org/has-ansi/-/has-ansi-0.1.0.tgz",
+      "dependencies": {
+        "ansi-regex": {
+          "version": "0.2.1",
+          "from": "ansi-regex@>=0.2.0 <0.3.0",
+          "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-0.2.1.tgz"
+        }
+      }
+    },
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@@ -1238,8 +1245,7 @@
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-      "resolved": "https://registry.npmjs.org/hooker/-/hooker-0.2.3.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/hooker/-/hooker-0.2.3.tgz"
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@@ -1342,27 +1348,23 @@
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           "from": "commander@0.6.1",
-          "resolved": "https://registry.npmjs.org/commander/-/commander-0.6.1.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/commander/-/commander-0.6.1.tgz"
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           "from": "mkdirp@0.3.0",
-          "resolved": "https://registry.npmjs.org/mkdirp/-/mkdirp-0.3.0.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/mkdirp/-/mkdirp-0.3.0.tgz"
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-      "resolved": "https://registry.npmjs.org/js-yaml/-/js-yaml-2.0.5.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/js-yaml/-/js-yaml-2.0.5.tgz"
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@@ -1427,6 +1429,11 @@
       "from": "jsprim@>=1.2.2 <2.0.0",
       "resolved": "https://registry.npmjs.org/jsprim/-/jsprim-1.4.1.tgz"
     },
+    "just-extend": {
+      "version": "4.0.2",
+      "from": "just-extend@>=4.0.2 <5.0.0",
+      "resolved": "https://registry.npmjs.org/just-extend/-/just-extend-4.0.2.tgz"
+    },
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       "from": "jwa@>=1.1.5 <2.0.0",
@@ -1447,15 +1454,204 @@
       "from": "lodash@>=4.17.1 <5.0.0",
       "resolved": "https://registry.npmjs.org/lodash/-/lodash-4.17.11.tgz"
     },
+    "lodash.get": {
+      "version": "4.4.2",
+      "from": "lodash.get@>=4.4.2 <5.0.0",
+      "resolved": "https://registry.npmjs.org/lodash.get/-/lodash.get-4.4.2.tgz"
+    },
     "lodash.pickby": {
       "version": "4.6.0",
       "from": "lodash.pickby@>=4.6.0 <5.0.0",
       "resolved": "https://registry.npmjs.org/lodash.pickby/-/lodash.pickby-4.6.0.tgz"
     },
     "logger-sharelatex": {
-      "version": "1.5.4",
-      "from": "git+https://github.com/sharelatex/logger-sharelatex.git#v1.5.4",
-      "resolved": "git+https://github.com/sharelatex/logger-sharelatex.git#9ee7b52eb2bbd8fcbb1e2c708587c1e93fd4c733"
+      "version": "1.5.9",
+      "from": "git+https://github.com/sharelatex/logger-sharelatex.git#v1.5.9",
+      "resolved": "git+https://github.com/sharelatex/logger-sharelatex.git#e8e1b95052f62e107336053e4a983f81cdbdf589",
+      "dependencies": {
+        "ansi-regex": {
+          "version": "0.2.1",
+          "from": "ansi-regex@^0.2.1",
+          "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-0.2.1.tgz"
+        },
+        "ansi-styles": {
+          "version": "1.1.0",
+          "from": "ansi-styles@>=1.1.0 <2.0.0",
+          "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-1.1.0.tgz"
+        },
+        "assertion-error": {
+          "version": "1.1.0",
+          "from": "assertion-error@>=1.1.0 <2.0.0",
+          "resolved": "https://registry.npmjs.org/assertion-error/-/assertion-error-1.1.0.tgz"
+        },
+        "bunyan": {
+          "version": "1.5.1",
+          "from": "bunyan@1.5.1",
+          "resolved": "https://registry.npmjs.org/bunyan/-/bunyan-1.5.1.tgz"
+        },
+        "chai": {
+          "version": "4.2.0",
+          "from": "chai@latest",
+          "resolved": "https://registry.npmjs.org/chai/-/chai-4.2.0.tgz"
+        },
+        "chalk": {
+          "version": "0.5.1",
+          "from": "chalk@>=0.5.0 <0.6.0",
+          "resolved": "https://registry.npmjs.org/chalk/-/chalk-0.5.1.tgz"
+        },
+        "coffee-script": {
+          "version": "1.12.4",
+          "from": "coffee-script@1.12.4",
+          "resolved": "https://registry.npmjs.org/coffee-script/-/coffee-script-1.12.4.tgz"
+        },
+        "deep-eql": {
+          "version": "3.0.1",
+          "from": "deep-eql@>=3.0.1 <4.0.0",
+          "resolved": "https://registry.npmjs.org/deep-eql/-/deep-eql-3.0.1.tgz"
+        },
+        "dtrace-provider": {
+          "version": "0.6.0",
+          "from": "dtrace-provider@>=0.6.0 <0.7.0",
+          "resolved": "https://registry.npmjs.org/dtrace-provider/-/dtrace-provider-0.6.0.tgz",
+          "optional": true
+        },
+        "fs-extra": {
+          "version": "0.9.1",
+          "from": "fs-extra@>=0.9.1 <0.10.0",
+          "resolved": "https://registry.npmjs.org/fs-extra/-/fs-extra-0.9.1.tgz",
+          "dependencies": {
+            "mkdirp": {
+              "version": "0.5.1",
+              "from": "mkdirp@>=0.5.0 <0.6.0",
+              "resolved": "https://registry.npmjs.org/mkdirp/-/mkdirp-0.5.1.tgz"
+            }
+          }
+        },
+        "glob": {
+          "version": "3.2.3",
+          "from": "glob@3.2.3",
+          "resolved": "https://registry.npmjs.org/glob/-/glob-3.2.3.tgz"
+        },
+        "graceful-fs": {
+          "version": "2.0.3",
+          "from": "graceful-fs@>=2.0.0 <2.1.0",
+          "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-2.0.3.tgz"
+        },
+        "grunt-contrib-clean": {
+          "version": "0.6.0",
+          "from": "grunt-contrib-clean@>=0.6.0 <0.7.0",
+          "resolved": "https://registry.npmjs.org/grunt-contrib-clean/-/grunt-contrib-clean-0.6.0.tgz"
+        },
+        "grunt-contrib-coffee": {
+          "version": "0.11.1",
+          "from": "grunt-contrib-coffee@>=0.11.0 <0.12.0",
+          "resolved": "https://registry.npmjs.org/grunt-contrib-coffee/-/grunt-contrib-coffee-0.11.1.tgz",
+          "dependencies": {
+            "coffee-script": {
+              "version": "1.7.1",
+              "from": "coffee-script@>=1.7.0 <1.8.0",
+              "resolved": "https://registry.npmjs.org/coffee-script/-/coffee-script-1.7.1.tgz"
+            }
+          }
+        },
+        "grunt-execute": {
+          "version": "0.2.2",
+          "from": "grunt-execute@>=0.2.2 <0.3.0",
+          "resolved": "https://registry.npmjs.org/grunt-execute/-/grunt-execute-0.2.2.tgz"
+        },
+        "grunt-mocha-test": {
+          "version": "0.11.0",
+          "from": "grunt-mocha-test@>=0.11.0 <0.12.0",
+          "resolved": "https://registry.npmjs.org/grunt-mocha-test/-/grunt-mocha-test-0.11.0.tgz"
+        },
+        "has-flag": {
+          "version": "3.0.0",
+          "from": "has-flag@>=3.0.0 <4.0.0",
+          "resolved": "https://registry.npmjs.org/has-flag/-/has-flag-3.0.0.tgz"
+        },
+        "jsonfile": {
+          "version": "1.1.1",
+          "from": "jsonfile@>=1.1.0 <1.2.0",
+          "resolved": "https://registry.npmjs.org/jsonfile/-/jsonfile-1.1.1.tgz"
+        },
+        "lodash": {
+          "version": "2.4.2",
+          "from": "lodash@>=2.4.1 <2.5.0",
+          "resolved": "https://registry.npmjs.org/lodash/-/lodash-2.4.2.tgz"
+        },
+        "lru-cache": {
+          "version": "2.7.3",
+          "from": "lru-cache@>=2.0.0 <3.0.0",
+          "resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-2.7.3.tgz"
+        },
+        "minimatch": {
+          "version": "0.2.14",
+          "from": "minimatch@>=0.2.11 <0.3.0",
+          "resolved": "https://registry.npmjs.org/minimatch/-/minimatch-0.2.14.tgz"
+        },
+        "mocha": {
+          "version": "1.20.1",
+          "from": "mocha@>=1.20.0 <1.21.0",
+          "resolved": "https://registry.npmjs.org/mocha/-/mocha-1.20.1.tgz"
+        },
+        "ncp": {
+          "version": "0.5.1",
+          "from": "ncp@>=0.5.1 <0.6.0",
+          "resolved": "https://registry.npmjs.org/ncp/-/ncp-0.5.1.tgz"
+        },
+        "rimraf": {
+          "version": "2.2.8",
+          "from": "rimraf@>=2.2.1 <2.3.0",
+          "resolved": "https://registry.npmjs.org/rimraf/-/rimraf-2.2.8.tgz"
+        },
+        "sandboxed-module": {
+          "version": "2.0.3",
+          "from": "sandboxed-module@latest",
+          "resolved": "https://registry.npmjs.org/sandboxed-module/-/sandboxed-module-2.0.3.tgz"
+        },
+        "sinon": {
+          "version": "7.2.2",
+          "from": "sinon@latest",
+          "resolved": "https://registry.npmjs.org/sinon/-/sinon-7.2.2.tgz",
+          "dependencies": {
+            "diff": {
+              "version": "3.5.0",
+              "from": "diff@>=3.5.0 <4.0.0",
+              "resolved": "https://registry.npmjs.org/diff/-/diff-3.5.0.tgz"
+            },
+            "supports-color": {
+              "version": "5.5.0",
+              "from": "supports-color@>=5.5.0 <6.0.0",
+              "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-5.5.0.tgz"
+            }
+          }
+        },
+        "strip-ansi": {
+          "version": "0.3.0",
+          "from": "strip-ansi@>=0.3.0 <0.4.0",
+          "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-0.3.0.tgz"
+        },
+        "supports-color": {
+          "version": "0.2.0",
+          "from": "supports-color@>=0.2.0 <0.3.0",
+          "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-0.2.0.tgz"
+        },
+        "timekeeper": {
+          "version": "1.0.0",
+          "from": "timekeeper@>=1.0.0 <2.0.0",
+          "resolved": "https://registry.npmjs.org/timekeeper/-/timekeeper-1.0.0.tgz"
+        },
+        "type-detect": {
+          "version": "4.0.8",
+          "from": "type-detect@>=4.0.5 <5.0.0",
+          "resolved": "https://registry.npmjs.org/type-detect/-/type-detect-4.0.8.tgz"
+        }
+      }
+    },
+    "lolex": {
+      "version": "3.0.0",
+      "from": "lolex@>=3.0.0 <4.0.0",
+      "resolved": "https://registry.npmjs.org/lolex/-/lolex-3.0.0.tgz"
     },
     "long": {
       "version": "4.0.0",
@@ -1627,28 +1823,24 @@
       "version": "2.1.1",
       "from": "mv@~2",
       "resolved": "https://registry.npmjs.org/mv/-/mv-2.1.1.tgz",
-      "dev": true,
       "optional": true,
       "dependencies": {
         "glob": {
           "version": "6.0.4",
           "from": "glob@>=6.0.1 <7.0.0",
           "resolved": "https://registry.npmjs.org/glob/-/glob-6.0.4.tgz",
-          "dev": true,
           "optional": true
         },
         "mkdirp": {
           "version": "0.5.1",
           "from": "mkdirp@>=0.5.1 <0.6.0",
           "resolved": "https://registry.npmjs.org/mkdirp/-/mkdirp-0.5.1.tgz",
-          "dev": true,
           "optional": true
         },
         "rimraf": {
           "version": "2.4.5",
           "from": "rimraf@>=2.4.0 <2.5.0",
           "resolved": "https://registry.npmjs.org/rimraf/-/rimraf-2.4.5.tgz",
-          "dev": true,
           "optional": true
         }
       }
@@ -1694,7 +1886,6 @@
       "version": "2.0.0",
       "from": "ncp@~2.0.0",
       "resolved": "http://registry.npmjs.org/ncp/-/ncp-2.0.0.tgz",
-      "dev": true,
       "optional": true
     },
     "needle": {
@@ -1707,6 +1898,28 @@
       "from": "negotiator@0.6.1",
       "resolved": "https://registry.npmjs.org/negotiator/-/negotiator-0.6.1.tgz"
     },
+    "nise": {
+      "version": "1.4.8",
+      "from": "nise@>=1.4.7 <2.0.0",
+      "resolved": "https://registry.npmjs.org/nise/-/nise-1.4.8.tgz",
+      "dependencies": {
+        "isarray": {
+          "version": "0.0.1",
+          "from": "isarray@0.0.1",
+          "resolved": "https://registry.npmjs.org/isarray/-/isarray-0.0.1.tgz"
+        },
+        "lolex": {
+          "version": "2.7.5",
+          "from": "lolex@>=2.3.2 <3.0.0",
+          "resolved": "https://registry.npmjs.org/lolex/-/lolex-2.7.5.tgz"
+        },
+        "path-to-regexp": {
+          "version": "1.7.0",
+          "from": "path-to-regexp@>=1.7.0 <2.0.0",
+          "resolved": "https://registry.npmjs.org/path-to-regexp/-/path-to-regexp-1.7.0.tgz"
+        }
+      }
+    },
     "node-fetch": {
       "version": "2.3.0",
       "from": "node-fetch@>=2.2.0 <3.0.0",
@@ -1829,6 +2042,11 @@
       "from": "path-to-regexp@0.1.7",
       "resolved": "https://registry.npmjs.org/path-to-regexp/-/path-to-regexp-0.1.7.tgz"
     },
+    "pathval": {
+      "version": "1.1.0",
+      "from": "pathval@>=1.1.0 <2.0.0",
+      "resolved": "https://registry.npmjs.org/pathval/-/pathval-1.1.0.tgz"
+    },
     "performance-now": {
       "version": "2.1.0",
       "from": "performance-now@>=2.1.0 <3.0.0",
@@ -1941,8 +2159,7 @@
     "require-like": {
       "version": "0.1.2",
       "from": "require-like@0.1.2",
-      "resolved": "https://registry.npmjs.org/require-like/-/require-like-0.1.2.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/require-like/-/require-like-0.1.2.tgz"
     },
     "resolve": {
       "version": "1.9.0",
@@ -1974,6 +2191,12 @@
       "from": "safe-buffer@>=5.1.1 <5.2.0",
       "resolved": "https://registry.npmjs.org/safe-buffer/-/safe-buffer-5.1.2.tgz"
     },
+    "safe-json-stringify": {
+      "version": "1.2.0",
+      "from": "safe-json-stringify@>=1.0.0 <2.0.0",
+      "resolved": "https://registry.npmjs.org/safe-json-stringify/-/safe-json-stringify-1.2.0.tgz",
+      "optional": true
+    },
     "safer-buffer": {
       "version": "2.1.2",
       "from": "safer-buffer@>=2.1.2 <3.0.0",
@@ -2053,16 +2276,9 @@
       "resolved": "https://registry.npmjs.org/setprototypeof/-/setprototypeof-1.1.0.tgz"
     },
     "settings-sharelatex": {
-      "version": "1.0.0",
-      "from": "git+https://github.com/sharelatex/settings-sharelatex.git#v1.0.0",
-      "resolved": "git+https://github.com/sharelatex/settings-sharelatex.git#cbc5e41c1dbe6789721a14b3fdae05bf22546559",
-      "dependencies": {
-        "coffee-script": {
-          "version": "1.6.0",
-          "from": "coffee-script@1.6.0",
-          "resolved": "https://registry.npmjs.org/coffee-script/-/coffee-script-1.6.0.tgz"
-        }
-      }
+      "version": "1.1.0",
+      "from": "git+https://github.com/sharelatex/settings-sharelatex.git#v1.1.0",
+      "resolved": "git+https://github.com/sharelatex/settings-sharelatex.git#93f63d029b52fef8825c3a401b2b6a7ba29b4750"
     },
     "shimmer": {
       "version": "1.2.0",
@@ -2072,8 +2288,7 @@
     "sigmund": {
       "version": "1.0.1",
       "from": "sigmund@~1.0.0",
-      "resolved": "https://registry.npmjs.org/sigmund/-/sigmund-1.0.1.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/sigmund/-/sigmund-1.0.1.tgz"
     },
     "signal-exit": {
       "version": "3.0.2",
@@ -2089,7 +2304,34 @@
     "smoke-test-sharelatex": {
       "version": "1.0.1",
       "from": "git+https://github.com/sharelatex/smoke-test-sharelatex.git#v0.2.0",
-      "resolved": "git+https://github.com/sharelatex/smoke-test-sharelatex.git#bc3e93d18ccee219c0d99e8b02c984ccdd842e1c"
+      "resolved": "git+https://github.com/sharelatex/smoke-test-sharelatex.git#bc3e93d18ccee219c0d99e8b02c984ccdd842e1c",
+      "dependencies": {
+        "glob": {
+          "version": "3.2.3",
+          "from": "glob@3.2.3",
+          "resolved": "https://registry.npmjs.org/glob/-/glob-3.2.3.tgz"
+        },
+        "graceful-fs": {
+          "version": "2.0.3",
+          "from": "graceful-fs@>=2.0.0 <2.1.0",
+          "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-2.0.3.tgz"
+        },
+        "lru-cache": {
+          "version": "2.7.3",
+          "from": "lru-cache@>=2.0.0 <3.0.0",
+          "resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-2.7.3.tgz"
+        },
+        "minimatch": {
+          "version": "0.2.14",
+          "from": "minimatch@>=0.2.11 <0.3.0",
+          "resolved": "https://registry.npmjs.org/minimatch/-/minimatch-0.2.14.tgz"
+        },
+        "mocha": {
+          "version": "1.17.1",
+          "from": "mocha@>=1.17.0 <1.18.0",
+          "resolved": "https://registry.npmjs.org/mocha/-/mocha-1.17.1.tgz"
+        }
+      }
     },
     "sntp": {
       "version": "1.0.9",
@@ -2252,6 +2494,11 @@
       "from": "terraformer-wkt-parser@>=1.1.2 <2.0.0",
       "resolved": "https://registry.npmjs.org/terraformer-wkt-parser/-/terraformer-wkt-parser-1.2.0.tgz"
     },
+    "text-encoding": {
+      "version": "0.6.4",
+      "from": "text-encoding@>=0.6.4 <0.7.0",
+      "resolved": "https://registry.npmjs.org/text-encoding/-/text-encoding-0.6.4.tgz"
+    },
     "through": {
       "version": "2.3.8",
       "from": "through@>=2.2.7 <3.0.0",
@@ -2329,8 +2576,7 @@
     "underscore.string": {
       "version": "2.2.1",
       "from": "underscore.string@>=2.2.1 <2.3.0",
-      "resolved": "https://registry.npmjs.org/underscore.string/-/underscore.string-2.2.1.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/underscore.string/-/underscore.string-2.2.1.tgz"
     },
     "unpipe": {
       "version": "1.0.0",
@@ -2462,8 +2708,7 @@
     "which": {
       "version": "1.0.9",
       "from": "which@>=1.0.5 <1.1.0",
-      "resolved": "https://registry.npmjs.org/which/-/which-1.0.9.tgz",
-      "dev": true
+      "resolved": "https://registry.npmjs.org/which/-/which-1.0.9.tgz"
     },
     "wide-align": {
       "version": "1.1.3",
diff --git a/services/clsi/package.json b/services/clsi/package.json
index 49f5873ed7..f981e5fac6 100644
--- a/services/clsi/package.json
+++ b/services/clsi/package.json
@@ -29,14 +29,14 @@
     "grunt-mkdir": "^1.0.0",
     "heapdump": "^0.3.5",
     "lockfile": "^1.0.3",
-    "logger-sharelatex": "git+https://github.com/sharelatex/logger-sharelatex.git#v1.5.4",
+    "logger-sharelatex": "git+https://github.com/sharelatex/logger-sharelatex.git#v1.5.9",
     "lynx": "0.0.11",
     "metrics-sharelatex": "git+https://github.com/sharelatex/metrics-sharelatex.git#v2.0.12",
     "mkdirp": "0.3.5",
     "mysql": "2.6.2",
     "request": "^2.21.0",
     "sequelize": "^4.38.0",
-    "settings-sharelatex": "git+https://github.com/sharelatex/settings-sharelatex.git#v1.0.0",
+    "settings-sharelatex": "git+https://github.com/sharelatex/settings-sharelatex.git#v1.1.0",
     "smoke-test-sharelatex": "git+https://github.com/sharelatex/smoke-test-sharelatex.git#v0.2.0",
     "sqlite3": "^4.0.2",
     "underscore": "^1.8.2",

From fe60edca561d45710c932d2275b23450bb4806ca Mon Sep 17 00:00:00 2001
From: Christopher Hoskin <christopher.hoskin@gmail.com>
Date: Fri, 11 Jan 2019 10:19:47 +0000
Subject: [PATCH 2/7] Init metrics at top of app.coffee

---
 services/clsi/app.coffee | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/services/clsi/app.coffee b/services/clsi/app.coffee
index f81021e1e8..ec9fc80311 100644
--- a/services/clsi/app.coffee
+++ b/services/clsi/app.coffee
@@ -1,3 +1,6 @@
+Metrics = require "metrics-sharelatex"
+Metrics.initialize("clsi")
+
 CompileController = require "./app/js/CompileController"
 Settings = require "settings-sharelatex"
 logger = require "logger-sharelatex"
@@ -12,8 +15,7 @@ Errors = require './app/js/Errors'
 Path = require "path"
 fs = require "fs"
 
-Metrics = require "metrics-sharelatex"
-Metrics.initialize("clsi")
+
 Metrics.open_sockets.monitor(logger)
 Metrics.memory.monitor(logger)
 

From cc00d5311be552d472717142caec8e429dc1c2fd Mon Sep 17 00:00:00 2001
From: Christopher Hoskin <christopher.hoskin@gmail.com>
Date: Fri, 11 Jan 2019 11:52:10 +0000
Subject: [PATCH 3/7] Bump buildscript to 1.1.11

---
 services/clsi/.github/ISSUE_TEMPLATE.md       | 38 ++++++++++++++++
 .../clsi/.github/PULL_REQUEST_TEMPLATE.md     | 45 +++++++++++++++++++
 services/clsi/Dockerfile                      |  2 +-
 services/clsi/Makefile                        |  2 +-
 services/clsi/buildscript.txt                 |  9 ++++
 services/clsi/docker-compose.ci.yml           |  3 +-
 services/clsi/docker-compose.yml              |  2 +-
 services/clsi/package.json                    |  2 +-
 8 files changed, 98 insertions(+), 5 deletions(-)
 create mode 100644 services/clsi/.github/ISSUE_TEMPLATE.md
 create mode 100644 services/clsi/.github/PULL_REQUEST_TEMPLATE.md
 create mode 100644 services/clsi/buildscript.txt

diff --git a/services/clsi/.github/ISSUE_TEMPLATE.md b/services/clsi/.github/ISSUE_TEMPLATE.md
new file mode 100644
index 0000000000..e0093aa90c
--- /dev/null
+++ b/services/clsi/.github/ISSUE_TEMPLATE.md
@@ -0,0 +1,38 @@
+<!-- BUG REPORT TEMPLATE -->
+
+## Steps to Reproduce
+<!-- Describe the steps leading up to when / where you found the bug. -->
+<!-- Screenshots may be helpful here. -->
+
+1.
+2.
+3.
+
+## Expected Behaviour
+<!-- What should have happened when you completed the steps above? -->
+
+## Observed Behaviour
+<!-- What actually happened when you completed the steps above? -->
+<!-- Screenshots may be helpful here. -->
+
+## Context
+<!-- How has this issue affected you? What were you trying to accomplish? -->
+
+## Technical Info
+<!-- Provide any technical details that may be applicable (or N/A if not applicable). -->
+
+* URL:
+* Browser Name and version:
+* Operating System and version (desktop or mobile):
+* Signed in as:
+* Project and/or file:
+
+## Analysis
+<!--- Optionally, document investigation of / suggest a fix for the bug, e.g. 'comes from this line / commit' -->
+
+## Who Needs to Know?
+<!-- If you want to bring this to the attention of particular people, @-mention them below. -->
+<!-- If a user reported this bug and should be notified when it is fixed, provide the Front conversation link. -->
+
+-
+-
diff --git a/services/clsi/.github/PULL_REQUEST_TEMPLATE.md b/services/clsi/.github/PULL_REQUEST_TEMPLATE.md
new file mode 100644
index 0000000000..ed25ee83c1
--- /dev/null
+++ b/services/clsi/.github/PULL_REQUEST_TEMPLATE.md
@@ -0,0 +1,45 @@
+<!-- Please review https://github.com/overleaf/write_latex/blob/master/.github/CONTRIBUTING.md for guidance on what is expected in each section. -->
+
+### Description
+
+
+
+#### Screenshots
+
+
+
+#### Related Issues / PRs
+
+
+
+### Review
+
+
+
+#### Potential Impact
+
+
+
+#### Manual Testing Performed
+
+- [ ]
+- [ ]
+
+#### Accessibility
+
+
+
+### Deployment
+
+
+
+#### Deployment Checklist
+
+- [ ] Update documentation not included in the PR (if any)
+- [ ]
+
+#### Metrics and Monitoring
+
+
+
+#### Who Needs to Know?
diff --git a/services/clsi/Dockerfile b/services/clsi/Dockerfile
index ea550b2892..861da2a06e 100644
--- a/services/clsi/Dockerfile
+++ b/services/clsi/Dockerfile
@@ -20,4 +20,4 @@ WORKDIR /app
 RUN chmod 0755 ./install_deps.sh && ./install_deps.sh
 ENTRYPOINT ["/bin/sh", "entrypoint.sh"]
 
-CMD ["node","app.js"]
+CMD ["node", "--expose-gc", "app.js"]
diff --git a/services/clsi/Makefile b/services/clsi/Makefile
index b1ce2934af..e7a1e341df 100644
--- a/services/clsi/Makefile
+++ b/services/clsi/Makefile
@@ -1,7 +1,7 @@
 # This file was auto-generated, do not edit it directly.
 # Instead run bin/update_build_scripts from
 # https://github.com/sharelatex/sharelatex-dev-environment
-# Version: 1.1.9
+# Version: 1.1.11
 
 BUILD_NUMBER ?= local
 BRANCH_NAME ?= $(shell git rev-parse --abbrev-ref HEAD)
diff --git a/services/clsi/buildscript.txt b/services/clsi/buildscript.txt
new file mode 100644
index 0000000000..abdf7ed9bf
--- /dev/null
+++ b/services/clsi/buildscript.txt
@@ -0,0 +1,9 @@
+--script-version=1.1.11
+clsi
+--node-version=6.15.1
+--acceptance-creds=None
+--language=coffeescript
+--dependencies=mongo,redis
+--docker-repos=gcr.io/overleaf-ops
+--kube=false
+--build-target=docker
diff --git a/services/clsi/docker-compose.ci.yml b/services/clsi/docker-compose.ci.yml
index f6c8a27fd0..698c5cb1b9 100644
--- a/services/clsi/docker-compose.ci.yml
+++ b/services/clsi/docker-compose.ci.yml
@@ -1,7 +1,7 @@
 # This file was auto-generated, do not edit it directly.
 # Instead run bin/update_build_scripts from
 # https://github.com/sharelatex/sharelatex-dev-environment
-# Version: 1.1.9
+# Version: 1.1.11
 
 version: "2"
 
@@ -10,6 +10,7 @@ services:
     image: ci/$PROJECT_NAME:$BRANCH_NAME-$BUILD_NUMBER
     command: npm run test:unit:_run
 
+
   test_acceptance:
     build: .
     image: ci/$PROJECT_NAME:$BRANCH_NAME-$BUILD_NUMBER
diff --git a/services/clsi/docker-compose.yml b/services/clsi/docker-compose.yml
index 371e6e768d..5c3c4c86a6 100644
--- a/services/clsi/docker-compose.yml
+++ b/services/clsi/docker-compose.yml
@@ -1,7 +1,7 @@
 # This file was auto-generated, do not edit it directly.
 # Instead run bin/update_build_scripts from
 # https://github.com/sharelatex/sharelatex-dev-environment
-# Version: 1.1.9
+# Version: 1.1.11
 
 version: "2"
 
diff --git a/services/clsi/package.json b/services/clsi/package.json
index f981e5fac6..a0e0a43bce 100644
--- a/services/clsi/package.json
+++ b/services/clsi/package.json
@@ -7,7 +7,7 @@
     "url": "https://github.com/sharelatex/clsi-sharelatex.git"
   },
   "scripts": {
-    "compile:app": "([ -e app/coffee ] && coffee $COFFEE_OPTIONS -o app/js -c app/coffee || echo 'No CoffeeScript folder to compile') && ( [ -e app.coffee ] && coffee $COFFEE_OPTIONS -c app.coffee || echo 'No CoffeeScript app to compile')",
+    "compile:app": "([ -e app/coffee ] && coffee -m $COFFEE_OPTIONS -o app/js -c app/coffee || echo 'No CoffeeScript folder to compile') && ( [ -e app.coffee ] && coffee -m $COFFEE_OPTIONS -c app.coffee || echo 'No CoffeeScript app to compile')",
     "start": "npm run compile:app && node $NODE_APP_OPTIONS app.js",
     "test:acceptance:_run": "mocha --recursive --reporter spec --timeout 30000 --exit $@ test/acceptance/js",
     "test:acceptance": "npm run compile:app && npm run compile:acceptance_tests && npm run test:acceptance:_run -- --grep=$MOCHA_GREP",

From 4aa2f7de328355eb1997baee96635b81556c9376 Mon Sep 17 00:00:00 2001
From: Christopher Hoskin <christopher.hoskin@gmail.com>
Date: Fri, 11 Jan 2019 12:06:45 +0000
Subject: [PATCH 4/7] Remove grunt

---
 services/clsi/Gruntfile.coffee    | 104 -----------
 services/clsi/npm-shrinkwrap.json | 280 ++++++++++--------------------
 services/clsi/package.json        |  20 +--
 3 files changed, 100 insertions(+), 304 deletions(-)
 delete mode 100644 services/clsi/Gruntfile.coffee

diff --git a/services/clsi/Gruntfile.coffee b/services/clsi/Gruntfile.coffee
deleted file mode 100644
index a30f141ed5..0000000000
--- a/services/clsi/Gruntfile.coffee
+++ /dev/null
@@ -1,104 +0,0 @@
-spawn = require("child_process").spawn
-
-module.exports = (grunt) ->
-	grunt.initConfig
-		coffee:
-			app_src:
-				expand: true,
-				flatten: true,
-				cwd: "app"
-				src: ['coffee/*.coffee'],
-				dest: 'app/js/',
-				ext: '.js'
-
-			app:
-				src: "app.coffee"
-				dest: "app.js"
-
-			unit_tests:
-				expand: true
-				cwd:  "test/unit/coffee"
-				src: ["**/*.coffee"]
-				dest: "test/unit/js/"
-				ext:  ".js"
-
-			acceptance_tests:
-				expand: true
-				cwd:  "test/acceptance/coffee"
-				src: ["**/*.coffee"]
-				dest: "test/acceptance/js/"
-				ext:  ".js"
-
-			smoke_tests:
-				expand: true
-				cwd:  "test/smoke/coffee"
-				src: ["**/*.coffee"]
-				dest: "test/smoke/js"
-				ext:  ".js"
-
-		clean:
-			app: ["app/js/"]
-			unit_tests: ["test/unit/js"]
-			acceptance_tests: ["test/acceptance/js"]
-			smoke_tests: ["test/smoke/js"]
-
-		execute:
-			app:
-				src: "app.js"
-
-		mkdir:
-			all:
-				options:
-					create: ["cache", "compiles"]
-
-		mochaTest:
-			unit:
-				options:
-					reporter: "spec"
-					grep: grunt.option("grep")
-				src: ["test/unit/js/**/*.js"]
-			acceptance:
-				options:
-					reporter: "spec"
-					timeout: 40000
-					grep: grunt.option("grep")
-				src: ["test/acceptance/js/**/*.js"]
-			smoke:
-				options:
-					reported: "spec"
-					timeout: 10000
-				src: ["test/smoke/js/**/*.js"]
-
-	grunt.loadNpmTasks 'grunt-contrib-coffee'
-	grunt.loadNpmTasks 'grunt-contrib-clean'
-	grunt.loadNpmTasks 'grunt-mocha-test'
-	grunt.loadNpmTasks 'grunt-shell'
-	grunt.loadNpmTasks 'grunt-execute'
-	grunt.loadNpmTasks 'grunt-bunyan'
-	grunt.loadNpmTasks 'grunt-mkdir'
-
-	grunt.registerTask 'compile:bin', () ->	
-		callback = @async()
-		proc = spawn "cc", [
-			"-o", "bin/synctex", "-Isrc/synctex",
-			"src/synctex.c", "src/synctex/synctex_parser.c", "src/synctex/synctex_parser_utils.c", "-lz"
-		], stdio: "inherit"
-		proc.on "close", callback
-
-	grunt.registerTask 'compile:app', ['clean:app', 'coffee:app', 'coffee:app_src', 'coffee:smoke_tests', 'compile:bin']
-	grunt.registerTask 'run',         ['compile:app', 'bunyan', 'execute']
-
-	grunt.registerTask 'compile:unit_tests', ['clean:unit_tests', 'coffee:unit_tests']
-	grunt.registerTask 'test:unit',          ['compile:app', 'compile:unit_tests', 'mochaTest:unit']
-
-	grunt.registerTask 'compile:acceptance_tests', ['clean:acceptance_tests', 'coffee:acceptance_tests']
-	grunt.registerTask 'test:acceptance',          ['compile:acceptance_tests', 'mochaTest:acceptance']
-
-	grunt.registerTask 'compile:smoke_tests', ['clean:smoke_tests', 'coffee:smoke_tests']
-	grunt.registerTask 'test:smoke',          ['compile:smoke_tests', 'mochaTest:smoke']
-
-	grunt.registerTask 'install', 'compile:app'
-
-	grunt.registerTask 'default', ['mkdir', 'run']
-
-
diff --git a/services/clsi/npm-shrinkwrap.json b/services/clsi/npm-shrinkwrap.json
index 48e31b1101..83b6b5037b 100644
--- a/services/clsi/npm-shrinkwrap.json
+++ b/services/clsi/npm-shrinkwrap.json
@@ -221,10 +221,9 @@
       "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-2.1.1.tgz"
     },
     "ansi-styles": {
-      "version": "0.2.0",
-      "from": "ansi-styles@>=0.2.0 <0.3.0",
-      "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-0.2.0.tgz",
-      "dev": true
+      "version": "1.1.0",
+      "from": "ansi-styles@>=1.1.0 <2.0.0",
+      "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-1.1.0.tgz"
     },
     "aproba": {
       "version": "1.2.0",
@@ -440,10 +439,26 @@
       "dev": true
     },
     "chalk": {
-      "version": "0.3.0",
-      "from": "chalk@>=0.3.0 <0.4.0",
-      "resolved": "https://registry.npmjs.org/chalk/-/chalk-0.3.0.tgz",
-      "dev": true
+      "version": "0.5.1",
+      "from": "chalk@>=0.5.0 <0.6.0",
+      "resolved": "https://registry.npmjs.org/chalk/-/chalk-0.5.1.tgz",
+      "dependencies": {
+        "ansi-regex": {
+          "version": "0.2.1",
+          "from": "ansi-regex@^0.2.1",
+          "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-0.2.1.tgz"
+        },
+        "strip-ansi": {
+          "version": "0.3.0",
+          "from": "strip-ansi@>=0.3.0 <0.4.0",
+          "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-0.3.0.tgz"
+        },
+        "supports-color": {
+          "version": "0.2.0",
+          "from": "supports-color@>=0.2.0 <0.3.0",
+          "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-0.2.0.tgz"
+        }
+      }
     },
     "check-error": {
       "version": "1.0.2",
@@ -954,7 +969,7 @@
     },
     "grunt": {
       "version": "0.4.5",
-      "from": "grunt@>=0.4.2 <0.5.0",
+      "from": "grunt@>=0.4.5 <0.5.0",
       "resolved": "https://registry.npmjs.org/grunt/-/grunt-0.4.5.tgz",
       "dependencies": {
         "async": {
@@ -994,7 +1009,7 @@
         },
         "lru-cache": {
           "version": "2.7.3",
-          "from": "lru-cache@>=2.0.0 <3.0.0",
+          "from": "lru-cache@2",
           "resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-2.7.3.tgz"
         },
         "minimatch": {
@@ -1027,38 +1042,38 @@
       }
     },
     "grunt-contrib-clean": {
-      "version": "0.5.0",
-      "from": "grunt-contrib-clean@>=0.5.0 <0.6.0",
-      "resolved": "https://registry.npmjs.org/grunt-contrib-clean/-/grunt-contrib-clean-0.5.0.tgz",
-      "dev": true,
+      "version": "0.6.0",
+      "from": "grunt-contrib-clean@>=0.6.0 <0.7.0",
+      "resolved": "https://registry.npmjs.org/grunt-contrib-clean/-/grunt-contrib-clean-0.6.0.tgz",
       "dependencies": {
         "rimraf": {
           "version": "2.2.8",
-          "from": "rimraf@>=2.2.1 <2.3.0",
-          "resolved": "https://registry.npmjs.org/rimraf/-/rimraf-2.2.8.tgz",
-          "dev": true
+          "from": "rimraf@~2.2.1",
+          "resolved": "https://registry.npmjs.org/rimraf/-/rimraf-2.2.8.tgz"
         }
       }
     },
     "grunt-contrib-coffee": {
-      "version": "0.7.0",
-      "from": "grunt-contrib-coffee@>=0.7.0 <0.8.0",
-      "resolved": "https://registry.npmjs.org/grunt-contrib-coffee/-/grunt-contrib-coffee-0.7.0.tgz",
-      "dev": true,
+      "version": "0.11.1",
+      "from": "grunt-contrib-coffee@>=0.11.0 <0.12.0",
+      "resolved": "https://registry.npmjs.org/grunt-contrib-coffee/-/grunt-contrib-coffee-0.11.1.tgz",
       "dependencies": {
         "coffee-script": {
-          "version": "1.6.3",
-          "from": "coffee-script@>=1.6.2 <1.7.0",
-          "resolved": "https://registry.npmjs.org/coffee-script/-/coffee-script-1.6.3.tgz",
-          "dev": true
+          "version": "1.7.1",
+          "from": "coffee-script@>=1.7.0 <1.8.0",
+          "resolved": "https://registry.npmjs.org/coffee-script/-/coffee-script-1.7.1.tgz"
+        },
+        "lodash": {
+          "version": "2.4.2",
+          "from": "lodash@>=2.4.1 <2.5.0",
+          "resolved": "https://registry.npmjs.org/lodash/-/lodash-2.4.2.tgz"
         }
       }
     },
     "grunt-execute": {
-      "version": "0.1.5",
-      "from": "grunt-execute@>=0.1.5 <0.2.0",
-      "resolved": "https://registry.npmjs.org/grunt-execute/-/grunt-execute-0.1.5.tgz",
-      "dev": true
+      "version": "0.2.2",
+      "from": "grunt-execute@>=0.2.2 <0.3.0",
+      "resolved": "https://registry.npmjs.org/grunt-execute/-/grunt-execute-0.2.2.tgz"
     },
     "grunt-legacy-log": {
       "version": "0.1.3",
@@ -1101,65 +1116,75 @@
       "dependencies": {
         "async": {
           "version": "0.1.22",
-          "from": "async@>=0.1.22 <0.2.0",
+          "from": "async@~0.1.22",
           "resolved": "https://registry.npmjs.org/async/-/async-0.1.22.tgz"
         },
         "lodash": {
           "version": "0.9.2",
-          "from": "lodash@>=0.9.2 <0.10.0",
+          "from": "lodash@~0.9.2",
           "resolved": "https://registry.npmjs.org/lodash/-/lodash-0.9.2.tgz"
         }
       }
     },
-    "grunt-mkdir": {
-      "version": "1.0.0",
-      "from": "grunt-mkdir@>=1.0.0 <2.0.0",
-      "resolved": "https://registry.npmjs.org/grunt-mkdir/-/grunt-mkdir-1.0.0.tgz"
-    },
     "grunt-mocha-test": {
-      "version": "0.8.2",
-      "from": "grunt-mocha-test@>=0.8.1 <0.9.0",
-      "resolved": "https://registry.npmjs.org/grunt-mocha-test/-/grunt-mocha-test-0.8.2.tgz",
-      "dev": true,
+      "version": "0.11.0",
+      "from": "grunt-mocha-test@>=0.11.0 <0.12.0",
+      "resolved": "https://registry.npmjs.org/grunt-mocha-test/-/grunt-mocha-test-0.11.0.tgz",
       "dependencies": {
+        "fs-extra": {
+          "version": "0.9.1",
+          "from": "fs-extra@>=0.9.1 <0.10.0",
+          "resolved": "https://registry.npmjs.org/fs-extra/-/fs-extra-0.9.1.tgz"
+        },
         "glob": {
           "version": "3.2.3",
           "from": "glob@3.2.3",
-          "resolved": "https://registry.npmjs.org/glob/-/glob-3.2.3.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/glob/-/glob-3.2.3.tgz"
         },
         "graceful-fs": {
           "version": "2.0.3",
           "from": "graceful-fs@>=2.0.0 <2.1.0",
-          "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-2.0.3.tgz",
-          "dev": true
+          "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-2.0.3.tgz"
+        },
+        "jsonfile": {
+          "version": "1.1.1",
+          "from": "jsonfile@>=1.1.0 <1.2.0",
+          "resolved": "https://registry.npmjs.org/jsonfile/-/jsonfile-1.1.1.tgz"
         },
         "lru-cache": {
           "version": "2.7.3",
-          "from": "lru-cache@>=2.0.0 <3.0.0",
-          "resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-2.7.3.tgz",
-          "dev": true
+          "from": "lru-cache@2",
+          "resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-2.7.3.tgz"
         },
         "minimatch": {
           "version": "0.2.14",
-          "from": "minimatch@>=0.2.11 <0.3.0",
-          "resolved": "https://registry.npmjs.org/minimatch/-/minimatch-0.2.14.tgz",
-          "dev": true
+          "from": "minimatch@~0.2.11",
+          "resolved": "https://registry.npmjs.org/minimatch/-/minimatch-0.2.14.tgz"
+        },
+        "mkdirp": {
+          "version": "0.5.1",
+          "from": "mkdirp@>=0.5.0 <0.6.0",
+          "resolved": "https://registry.npmjs.org/mkdirp/-/mkdirp-0.5.1.tgz"
         },
         "mocha": {
-          "version": "1.14.0",
-          "from": "mocha@>=1.14.0 <1.15.0",
-          "resolved": "https://registry.npmjs.org/mocha/-/mocha-1.14.0.tgz",
-          "dev": true
+          "version": "1.20.1",
+          "from": "mocha@>=1.20.0 <1.21.0",
+          "resolved": "https://registry.npmjs.org/mocha/-/mocha-1.20.1.tgz",
+          "dependencies": {
+            "mkdirp": {
+              "version": "0.3.5",
+              "from": "mkdirp@0.3.5",
+              "resolved": "https://registry.npmjs.org/mkdirp/-/mkdirp-0.3.5.tgz"
+            }
+          }
+        },
+        "ncp": {
+          "version": "0.5.1",
+          "from": "ncp@>=0.5.1 <0.6.0",
+          "resolved": "https://registry.npmjs.org/ncp/-/ncp-0.5.1.tgz"
         }
       }
     },
-    "grunt-shell": {
-      "version": "0.6.4",
-      "from": "grunt-shell@>=0.6.1 <0.7.0",
-      "resolved": "https://registry.npmjs.org/grunt-shell/-/grunt-shell-0.6.4.tgz",
-      "dev": true
-    },
     "gtoken": {
       "version": "2.3.0",
       "from": "gtoken@>=2.3.0 <3.0.0",
@@ -1199,12 +1224,6 @@
         }
       }
     },
-    "has-color": {
-      "version": "0.1.7",
-      "from": "has-color@>=0.1.0 <0.2.0",
-      "resolved": "https://registry.npmjs.org/has-color/-/has-color-0.1.7.tgz",
-      "dev": true
-    },
     "has-flag": {
       "version": "2.0.0",
       "from": "has-flag@>=2.0.0 <3.0.0",
@@ -1469,16 +1488,6 @@
       "from": "git+https://github.com/sharelatex/logger-sharelatex.git#v1.5.9",
       "resolved": "git+https://github.com/sharelatex/logger-sharelatex.git#e8e1b95052f62e107336053e4a983f81cdbdf589",
       "dependencies": {
-        "ansi-regex": {
-          "version": "0.2.1",
-          "from": "ansi-regex@^0.2.1",
-          "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-0.2.1.tgz"
-        },
-        "ansi-styles": {
-          "version": "1.1.0",
-          "from": "ansi-styles@>=1.1.0 <2.0.0",
-          "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-1.1.0.tgz"
-        },
         "assertion-error": {
           "version": "1.1.0",
           "from": "assertion-error@>=1.1.0 <2.0.0",
@@ -1494,11 +1503,6 @@
           "from": "chai@latest",
           "resolved": "https://registry.npmjs.org/chai/-/chai-4.2.0.tgz"
         },
-        "chalk": {
-          "version": "0.5.1",
-          "from": "chalk@>=0.5.0 <0.6.0",
-          "resolved": "https://registry.npmjs.org/chalk/-/chalk-0.5.1.tgz"
-        },
         "coffee-script": {
           "version": "1.12.4",
           "from": "coffee-script@1.12.4",
@@ -1509,101 +1513,22 @@
           "from": "deep-eql@>=3.0.1 <4.0.0",
           "resolved": "https://registry.npmjs.org/deep-eql/-/deep-eql-3.0.1.tgz"
         },
+        "diff": {
+          "version": "3.5.0",
+          "from": "diff@>=3.5.0 <4.0.0",
+          "resolved": "https://registry.npmjs.org/diff/-/diff-3.5.0.tgz"
+        },
         "dtrace-provider": {
           "version": "0.6.0",
           "from": "dtrace-provider@>=0.6.0 <0.7.0",
           "resolved": "https://registry.npmjs.org/dtrace-provider/-/dtrace-provider-0.6.0.tgz",
           "optional": true
         },
-        "fs-extra": {
-          "version": "0.9.1",
-          "from": "fs-extra@>=0.9.1 <0.10.0",
-          "resolved": "https://registry.npmjs.org/fs-extra/-/fs-extra-0.9.1.tgz",
-          "dependencies": {
-            "mkdirp": {
-              "version": "0.5.1",
-              "from": "mkdirp@>=0.5.0 <0.6.0",
-              "resolved": "https://registry.npmjs.org/mkdirp/-/mkdirp-0.5.1.tgz"
-            }
-          }
-        },
-        "glob": {
-          "version": "3.2.3",
-          "from": "glob@3.2.3",
-          "resolved": "https://registry.npmjs.org/glob/-/glob-3.2.3.tgz"
-        },
-        "graceful-fs": {
-          "version": "2.0.3",
-          "from": "graceful-fs@>=2.0.0 <2.1.0",
-          "resolved": "https://registry.npmjs.org/graceful-fs/-/graceful-fs-2.0.3.tgz"
-        },
-        "grunt-contrib-clean": {
-          "version": "0.6.0",
-          "from": "grunt-contrib-clean@>=0.6.0 <0.7.0",
-          "resolved": "https://registry.npmjs.org/grunt-contrib-clean/-/grunt-contrib-clean-0.6.0.tgz"
-        },
-        "grunt-contrib-coffee": {
-          "version": "0.11.1",
-          "from": "grunt-contrib-coffee@>=0.11.0 <0.12.0",
-          "resolved": "https://registry.npmjs.org/grunt-contrib-coffee/-/grunt-contrib-coffee-0.11.1.tgz",
-          "dependencies": {
-            "coffee-script": {
-              "version": "1.7.1",
-              "from": "coffee-script@>=1.7.0 <1.8.0",
-              "resolved": "https://registry.npmjs.org/coffee-script/-/coffee-script-1.7.1.tgz"
-            }
-          }
-        },
-        "grunt-execute": {
-          "version": "0.2.2",
-          "from": "grunt-execute@>=0.2.2 <0.3.0",
-          "resolved": "https://registry.npmjs.org/grunt-execute/-/grunt-execute-0.2.2.tgz"
-        },
-        "grunt-mocha-test": {
-          "version": "0.11.0",
-          "from": "grunt-mocha-test@>=0.11.0 <0.12.0",
-          "resolved": "https://registry.npmjs.org/grunt-mocha-test/-/grunt-mocha-test-0.11.0.tgz"
-        },
         "has-flag": {
           "version": "3.0.0",
           "from": "has-flag@>=3.0.0 <4.0.0",
           "resolved": "https://registry.npmjs.org/has-flag/-/has-flag-3.0.0.tgz"
         },
-        "jsonfile": {
-          "version": "1.1.1",
-          "from": "jsonfile@>=1.1.0 <1.2.0",
-          "resolved": "https://registry.npmjs.org/jsonfile/-/jsonfile-1.1.1.tgz"
-        },
-        "lodash": {
-          "version": "2.4.2",
-          "from": "lodash@>=2.4.1 <2.5.0",
-          "resolved": "https://registry.npmjs.org/lodash/-/lodash-2.4.2.tgz"
-        },
-        "lru-cache": {
-          "version": "2.7.3",
-          "from": "lru-cache@>=2.0.0 <3.0.0",
-          "resolved": "https://registry.npmjs.org/lru-cache/-/lru-cache-2.7.3.tgz"
-        },
-        "minimatch": {
-          "version": "0.2.14",
-          "from": "minimatch@>=0.2.11 <0.3.0",
-          "resolved": "https://registry.npmjs.org/minimatch/-/minimatch-0.2.14.tgz"
-        },
-        "mocha": {
-          "version": "1.20.1",
-          "from": "mocha@>=1.20.0 <1.21.0",
-          "resolved": "https://registry.npmjs.org/mocha/-/mocha-1.20.1.tgz"
-        },
-        "ncp": {
-          "version": "0.5.1",
-          "from": "ncp@>=0.5.1 <0.6.0",
-          "resolved": "https://registry.npmjs.org/ncp/-/ncp-0.5.1.tgz"
-        },
-        "rimraf": {
-          "version": "2.2.8",
-          "from": "rimraf@>=2.2.1 <2.3.0",
-          "resolved": "https://registry.npmjs.org/rimraf/-/rimraf-2.2.8.tgz"
-        },
         "sandboxed-module": {
           "version": "2.0.3",
           "from": "sandboxed-module@latest",
@@ -1612,29 +1537,12 @@
         "sinon": {
           "version": "7.2.2",
           "from": "sinon@latest",
-          "resolved": "https://registry.npmjs.org/sinon/-/sinon-7.2.2.tgz",
-          "dependencies": {
-            "diff": {
-              "version": "3.5.0",
-              "from": "diff@>=3.5.0 <4.0.0",
-              "resolved": "https://registry.npmjs.org/diff/-/diff-3.5.0.tgz"
-            },
-            "supports-color": {
-              "version": "5.5.0",
-              "from": "supports-color@>=5.5.0 <6.0.0",
-              "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-5.5.0.tgz"
-            }
-          }
-        },
-        "strip-ansi": {
-          "version": "0.3.0",
-          "from": "strip-ansi@>=0.3.0 <0.4.0",
-          "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-0.3.0.tgz"
+          "resolved": "https://registry.npmjs.org/sinon/-/sinon-7.2.2.tgz"
         },
         "supports-color": {
-          "version": "0.2.0",
-          "from": "supports-color@>=0.2.0 <0.3.0",
-          "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-0.2.0.tgz"
+          "version": "5.5.0",
+          "from": "supports-color@>=5.5.0 <6.0.0",
+          "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-5.5.0.tgz"
         },
         "timekeeper": {
           "version": "1.0.0",
diff --git a/services/clsi/package.json b/services/clsi/package.json
index a0e0a43bce..065cdce62b 100644
--- a/services/clsi/package.json
+++ b/services/clsi/package.json
@@ -26,7 +26,6 @@
     "dockerode": "^2.5.3",
     "express": "^4.2.0",
     "fs-extra": "^0.16.3",
-    "grunt-mkdir": "^1.0.0",
     "heapdump": "^0.3.5",
     "lockfile": "^1.0.3",
     "logger-sharelatex": "git+https://github.com/sharelatex/logger-sharelatex.git#v1.5.9",
@@ -44,19 +43,12 @@
     "wrench": "~1.5.4"
   },
   "devDependencies": {
-    "mocha": "^4.0.1",
-    "coffee-script": "1.6.0",
-    "chai": "~1.8.1",
-    "sinon": "~1.7.3",
-    "grunt": "~0.4.2",
-    "grunt-contrib-coffee": "~0.7.0",
-    "grunt-contrib-clean": "~0.5.0",
-    "grunt-shell": "~0.6.1",
-    "grunt-mocha-test": "~0.8.1",
-    "sandboxed-module": "~0.3.0",
-    "timekeeper": "0.0.4",
-    "grunt-execute": "^0.1.5",
     "bunyan": "^0.22.1",
-    "grunt-bunyan": "^0.5.0"
+    "chai": "~1.8.1",
+    "coffee-script": "1.6.0",
+    "mocha": "^4.0.1",
+    "sandboxed-module": "~0.3.0",
+    "sinon": "~1.7.3",
+    "timekeeper": "0.0.4"
   }
 }

From f39b51de047378ce53f353d467f6fb97fd6e7e09 Mon Sep 17 00:00:00 2001
From: Christopher Hoskin <christopher.hoskin@gmail.com>
Date: Fri, 11 Jan 2019 12:11:36 +0000
Subject: [PATCH 5/7] Add **/*.map to .gitignore

---
 services/clsi/.gitignore | 1 +
 1 file changed, 1 insertion(+)

diff --git a/services/clsi/.gitignore b/services/clsi/.gitignore
index 7fb78eefa0..048a75b9a8 100644
--- a/services/clsi/.gitignore
+++ b/services/clsi/.gitignore
@@ -7,6 +7,7 @@ test/acceptance/js
 test/acceptance/fixtures/tmp
 compiles
 app.js
+**/*.map
 .DS_Store
 *~
 cache

From b826b6ce627239e047a82f3e0506595df4c74ef9 Mon Sep 17 00:00:00 2001
From: Christopher Hoskin <christopher.hoskin@gmail.com>
Date: Tue, 15 Jan 2019 11:12:21 +0000
Subject: [PATCH 6/7] Pass arguments to node, not to runuser

---
 services/clsi/entrypoint.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/services/clsi/entrypoint.sh b/services/clsi/entrypoint.sh
index cb2580cbbf..f6d4bb1e63 100755
--- a/services/clsi/entrypoint.sh
+++ b/services/clsi/entrypoint.sh
@@ -20,4 +20,4 @@ chown -R node:node /app
 chown -R node:node /app/bin
 
 ./bin/install_texlive_gce.sh
-exec runuser -u node "$@"
\ No newline at end of file
+exec runuser -u node "$*"

From 3e747542ac81f6c5235cae808ec6aa37122df973 Mon Sep 17 00:00:00 2001
From: Christopher Hoskin <christopher.hoskin@gmail.com>
Date: Tue, 15 Jan 2019 11:29:04 +0000
Subject: [PATCH 7/7] Correctly pass command with arguments to runuser

---
 services/clsi/entrypoint.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/services/clsi/entrypoint.sh b/services/clsi/entrypoint.sh
index f6d4bb1e63..ea295c7e10 100755
--- a/services/clsi/entrypoint.sh
+++ b/services/clsi/entrypoint.sh
@@ -20,4 +20,4 @@ chown -R node:node /app
 chown -R node:node /app/bin
 
 ./bin/install_texlive_gce.sh
-exec runuser -u node "$*"
+exec runuser -u node -- "$@"