added docker runner into core codebase

supports both local command runner and docker runner

added docker files for tex live

also fixed tests so they exit correctly & removed debug lines

services/clsi/app/coffee/CommandRunner.coffee

@@ -1,44 +1,11 @@
-spawn = require("child_process").spawn
+Settings = require "settings-sharelatex"
 logger = require "logger-sharelatex"
 
-logger.info "using standard command runner"
+if Settings.clsi?.dockerRunner == true
+	commandRunnerPath = "./DockerRunner"
+else 
+	commandRunnerPath = "./LocalCommandRunner"
+logger.info commandRunnerPath:commandRunnerPath, "selecting command runner for clsi"
+CommandRunner = require(commandRunnerPath)
 
-module.exports = CommandRunner =
-	run: (project_id, command, directory, image, timeout, environment, callback = (error) ->) ->
-		command = (arg.replace('$COMPILE_DIR', directory) for arg in command)
-		logger.log project_id: project_id, command: command, directory: directory, "running command"
-		logger.warn "timeouts and sandboxing are not enabled with CommandRunner"
-
-		# merge environment settings
-		env = {}
-		env[key] = value for key, value of process.env
-		env[key] = value for key, value of environment
-
-		# run command as detached process so it has its own process group (which can be killed if needed)
-		proc = spawn command[0], command.slice(1), stdio: "inherit", cwd: directory, detached: true, env: env
-
-		proc.on "error", (err)->
-			logger.err err:err, project_id:project_id, command: command, directory: directory, "error running command"
-			callback(err)
-
-		proc.on "close", (code, signal) ->
-			logger.info code:code, signal:signal, project_id:project_id, "command exited"
-			if signal is 'SIGTERM' # signal from kill method below
-				err = new Error("terminated")
-				err.terminated = true
-				return callback(err)
-			else if code is 1 # exit status from chktex
-				err = new Error("exited")
-				err.code = code
-				return callback(err)
-			else
-				callback()
-
-		return proc.pid # return process id to allow job to be killed if necessary
-
-	kill: (pid, callback = (error) ->) ->
-		try
-			process.kill -pid # kill all processes in group
-		catch err
-			return callback(err)
-		callback()
+module.exports = CommandRunner

services/clsi/app/coffee/CompileManager.coffee

@@ -15,10 +15,7 @@ fse = require "fs-extra"
 os = require("os")
 async = require "async"
 Errors = require './Errors'
-
-commandRunner = Settings.clsi?.commandRunner or "./CommandRunner"
-logger.info commandRunner:commandRunner, "selecting command runner for clsi"
-CommandRunner = require(commandRunner)
+CommandRunner = require "./CommandRunner"
 
 getCompileName = (project_id, user_id) ->
 	if user_id? then "#{project_id}-#{user_id}" else project_id

services/clsi/app/coffee/DockerLockManager.coffee

@@ -0,0 +1,56 @@
+logger = require "logger-sharelatex"
+
+LockState = {} # locks for docker container operations, by container name
+
+module.exports = LockManager =
+
+	MAX_LOCK_HOLD_TIME: 15000  # how long we can keep a lock
+	MAX_LOCK_WAIT_TIME: 10000  # how long we wait for a lock
+	LOCK_TEST_INTERVAL: 1000   # retry time
+
+	tryLock: (key, callback = (err, gotLock) ->) ->
+		existingLock = LockState[key]
+		if existingLock? # the lock is already taken, check how old it is
+			lockAge = Date.now() - existingLock.created
+			if lockAge < LockManager.MAX_LOCK_HOLD_TIME
+				return callback(null, false) # we didn't get the lock, bail out
+			else
+				logger.error {key: key, lock: existingLock, age:lockAge}, "taking old lock by force"
+		# take the lock
+		LockState[key] = lockValue = {created: Date.now()}
+		callback(null, true, lockValue)
+
+	getLock: (key, callback = (error, lockValue) ->) ->
+		startTime = Date.now()
+		do attempt = () ->
+			LockManager.tryLock key, (error, gotLock, lockValue) ->
+				return callback(error) if error?
+				if gotLock
+					callback(null, lockValue)
+				else if Date.now() - startTime > LockManager.MAX_LOCK_WAIT_TIME
+					e = new Error("Lock timeout")
+					e.key = key
+					return callback(e)
+				else
+					setTimeout attempt, LockManager.LOCK_TEST_INTERVAL
+
+	releaseLock: (key, lockValue, callback = (error) ->) ->
+		existingLock = LockState[key]
+		if existingLock is lockValue # lockValue is an object, so we can test by reference
+			delete LockState[key] # our lock, so we can free it
+			callback()
+		else if existingLock? # lock exists but doesn't match ours
+			logger.error {key:key, lock: existingLock}, "tried to release lock taken by force"
+			callback()
+		else
+			logger.error {key:key, lock: existingLock}, "tried to release lock that has gone"
+			callback()
+
+	runWithLock: (key, runner = ( (releaseLock = (error) ->) -> ), callback = ( (error) -> )) ->
+		LockManager.getLock key, (error, lockValue) ->
+			return callback(error) if error?
+			runner (error1, args...) ->
+				LockManager.releaseLock key, lockValue, (error2) ->
+					error = error1 or error2
+					return callback(error) if error?
+					callback(null, args...)

services/clsi/app/coffee/DockerRunner.coffee

@@ -0,0 +1,348 @@
+Settings = require "settings-sharelatex"
+logger = require "logger-sharelatex"
+Docker = require("dockerode")
+dockerode = new Docker()
+crypto = require "crypto"
+async = require "async"
+LockManager = require "./DockerLockManager"
+fs = require "fs"
+Path = require 'path'
+_ = require "underscore"
+
+logger.info "using docker runner"
+
+usingSiblingContainers = () ->
+	Settings?.path?.sandboxedCompilesHostDir?
+
+module.exports = DockerRunner =
+	ERR_NOT_DIRECTORY: new Error("not a directory")
+	ERR_TERMINATED: new Error("terminated")
+	ERR_EXITED: new Error("exited")
+	ERR_TIMED_OUT: new Error("container timed out")
+
+	run: (project_id, command, directory, image, timeout, environment, callback = (error, output) ->) ->
+
+		if usingSiblingContainers()
+			_newPath = Settings.path.sandboxedCompilesHostDir
+			logger.log {path: _newPath}, "altering bind path for sibling containers"
+			# Server Pro, example:
+			#   '/var/lib/sharelatex/data/compiles/<project-id>'
+			#   ... becomes ...
+			#   '/opt/sharelatex_data/data/compiles/<project-id>'
+			directory = Path.join(Settings.path.sandboxedCompilesHostDir, Path.basename(directory))
+
+		volumes = {}
+		volumes[directory] = "/compile"
+
+		command = (arg.toString().replace?('$COMPILE_DIR', "/compile") for arg in command)
+		if !image?
+			image = Settings.clsi.docker.image
+
+		options      = DockerRunner._getContainerOptions(command, image, volumes, timeout, environment)
+		fingerprint  = DockerRunner._fingerprintContainer(options)
+		options.name = name = "project-#{project_id}-#{fingerprint}"
+
+		logger.log project_id: project_id, options: options, "running docker container"
+		DockerRunner._runAndWaitForContainer options, volumes, timeout, (error, output) ->
+			if error?.message?.match("HTTP code is 500")
+				logger.log err: error, project_id: project_id, "error running container so destroying and retrying"
+				DockerRunner.destroyContainer name, null, true, (error) ->
+					return callback(error) if error?
+					DockerRunner._runAndWaitForContainer options, volumes, timeout, callback
+			else
+				callback(error, output)
+
+		return name # pass back the container name to allow it to be killed
+
+	kill: (container_id, callback = (error) ->) ->
+		logger.log container_id: container_id, "sending kill signal to container"
+		container = dockerode.getContainer(container_id)
+		container.kill (error) ->
+			if error? and error?.message?.match?(/Cannot kill container .* is not running/)
+				logger.warn err: error, container_id: container_id, "container not running, continuing"
+				error = null
+			if error?
+				logger.error err: error, container_id: container_id, "error killing container"
+				return callback(error)
+			else
+				callback()
+
+	_runAndWaitForContainer: (options, volumes, timeout, _callback = (error, output) ->) ->
+		callback = (args...) ->
+			_callback(args...)
+			# Only call the callback once
+			_callback = () ->
+		
+		name = options.name
+
+		streamEnded = false
+		containerReturned = false
+		output = {}
+
+		callbackIfFinished = () ->
+			if streamEnded and containerReturned
+				callback(null, output)
+
+		attachStreamHandler = (error, _output) ->
+			return callback(error) if error?
+			output = _output
+			streamEnded = true
+			callbackIfFinished()
+
+		DockerRunner.startContainer options, volumes, attachStreamHandler, (error, containerId) ->
+			return callback(error) if error?
+			
+			DockerRunner.waitForContainer name, timeout, (error, exitCode) ->
+				return callback(error) if error?
+				if exitCode is 137  # exit status from kill -9
+					err = DockerRunner.ERR_TERMINATED
+					err.terminated = true
+					return callback(err)
+				if exitCode is 1 # exit status from chktex
+					err = DockerRunner.ERR_EXITED
+					err.code = exitCode
+					return callback(err)
+				containerReturned = true
+				callbackIfFinished()
+
+	_getContainerOptions: (command, image, volumes, timeout, environment) ->
+		timeoutInSeconds = timeout / 1000
+		
+		if Settings.path?.synctexBinHostPath?
+			volumes[Settings.path.synctexBinHostPath] = "/opt/synctex:ro"
+
+		dockerVolumes = {}
+		for hostVol, dockerVol of volumes
+			dockerVolumes[dockerVol] = {}
+
+			if volumes[hostVol].slice(-3).indexOf(":r") == -1
+				volumes[hostVol] = "#{dockerVol}:rw"
+
+
+		# merge settings and environment parameter
+		env = {}
+		for src in [Settings.clsi.docker.env, environment or {}]
+			env[key] = value for key, value of src
+		# set the path based on the image year
+		if m = image.match /:([0-9]+)\.[0-9]+/
+			year = m[1]
+		else
+			year = "2014"
+		env['PATH'] = "/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/local/texlive/#{year}/bin/x86_64-linux/"
+		options =
+			"Cmd"             : command,
+			"Image"           : image
+			"Volumes"         : dockerVolumes
+			"WorkingDir"      : "/compile"
+			"NetworkDisabled" : true
+			"Memory"          : 1024 * 1024 * 1024 * 1024 # 1 Gb
+			"User"            : Settings.clsi.docker.user
+			"Env"             : ("#{key}=#{value}" for key, value of env)	# convert the environment hash to an array
+			"HostConfig"      :
+				"Binds": ("#{hostVol}:#{dockerVol}" for hostVol, dockerVol of volumes)
+				"LogConfig": {"Type": "none", "Config": {}}
+				"Ulimits": [{'Name': 'cpu', 'Soft': timeoutInSeconds+5, 'Hard': timeoutInSeconds+10}]
+				"CapDrop": "ALL"
+				"SecurityOpt": ["no-new-privileges"]
+		if Settings.clsi.docker.seccomp_profile?
+			options.HostConfig.SecurityOpt.push "seccomp=#{Settings.clsi.docker.seccomp_profile}"
+		return options
+
+	_fingerprintContainer: (containerOptions) ->
+		# Yay, Hashing!
+		json = JSON.stringify(containerOptions)
+		return crypto.createHash("md5").update(json).digest("hex")
+
+	startContainer: (options, volumes, attachStreamHandler, callback) ->
+		LockManager.runWithLock options.name, (releaseLock) ->
+			# Check that volumes exist before starting the container.
+			# When a container is started with volume pointing to a
+			# non-existent directory then docker creates the directory but
+			# with root ownership.
+			DockerRunner._checkVolumes options, volumes, (err) ->
+				return releaseLock(err) if err?
+				DockerRunner._startContainer options, volumes, attachStreamHandler, releaseLock
+		, callback
+
+	# Check that volumes exist and are directories
+	_checkVolumes: (options, volumes, callback = (error, containerName) ->) ->
+		if usingSiblingContainers()
+			# Server Pro, with sibling-containers active, skip checks
+			return callback(null)
+
+		checkVolume = (path, cb) ->
+			fs.stat path, (err, stats) ->
+				return cb(err) if err?
+				return cb(DockerRunner.ERR_NOT_DIRECTORY) if not stats?.isDirectory()
+				cb()
+		jobs = []
+		for vol of volumes
+			do (vol) ->
+				jobs.push (cb) -> checkVolume(vol, cb)
+		async.series jobs, callback
+
+	_startContainer: (options, volumes, attachStreamHandler, callback = ((error, output) ->)) ->
+		callback = _.once(callback)
+		name = options.name
+
+		logger.log {container_name: name}, "starting container"
+		container = dockerode.getContainer(name)
+
+		createAndStartContainer = ->
+			dockerode.createContainer options, (error, container) ->
+				return callback(error) if error?
+				startExistingContainer()
+
+		startExistingContainer = ->
+			DockerRunner.attachToContainer options.name, attachStreamHandler, (error)->
+				return callback(error) if error?
+				container.start (error) ->
+					if error? and error?.statusCode != 304 #already running
+						return callback(error)
+					else
+						callback()
+
+		container.inspect (error, stats)->
+			if error?.statusCode == 404
+				createAndStartContainer()
+			else if error?
+				logger.err {container_name: name}, "unable to inspect container to start"
+				return callback(error)
+			else
+				startExistingContainer()
+
+
+	attachToContainer: (containerId, attachStreamHandler, attachStartCallback) ->
+		container = dockerode.getContainer(containerId)
+		container.attach {stdout: 1, stderr: 1, stream: 1}, (error, stream) ->
+			if error?
+				logger.error err: error, container_id: containerId, "error attaching to container"
+				return attachStartCallback(error)
+			else
+				attachStartCallback()
+
+
+			logger.log container_id: containerId, "attached to container"
+
+			MAX_OUTPUT = 1024 * 1024 # limit output to 1MB
+			createStringOutputStream = (name) ->
+				return {
+					data: ""
+					overflowed: false
+					write: (data) ->
+						return if @overflowed
+						if @data.length < MAX_OUTPUT
+							@data += data
+						else
+							logger.error container_id: containerId, length: @data.length, maxLen: MAX_OUTPUT, "#{name} exceeds max size"
+							@data += "(...truncated at #{MAX_OUTPUT} chars...)"
+							@overflowed = true
+							# kill container if too much output
+							# docker.containers.kill(containerId, () ->)
+				}
+
+			stdout = createStringOutputStream "stdout"
+			stderr = createStringOutputStream "stderr"
+
+			container.modem.demuxStream(stream, stdout, stderr)
+
+			stream.on "error", (err) ->
+				logger.error err: err, container_id: containerId, "error reading from container stream"
+
+			stream.on "end", () ->
+				attachStreamHandler null, {stdout: stdout.data, stderr: stderr.data}
+
+	waitForContainer: (containerId, timeout, _callback = (error, exitCode) ->) ->
+		callback = (args...) ->
+			_callback(args...)
+			# Only call the callback once
+			_callback = () ->
+
+		container = dockerode.getContainer(containerId)
+
+		timedOut = false
+		timeoutId = setTimeout () ->
+			timedOut = true
+			logger.log container_id: containerId, "timeout reached, killing container"
+			container.kill(() ->)
+		, timeout
+			
+		logger.log container_id: containerId, "waiting for docker container"
+		container.wait (error, res) ->
+			if error?
+				clearTimeout timeoutId
+				logger.error err: error, container_id: containerId, "error waiting for container"
+				return callback(error)
+			if timedOut
+				logger.log containerId: containerId, "docker container timed out"
+				error = DockerRunner.ERR_TIMED_OUT
+				error.timedout = true
+				callback error
+			else
+				clearTimeout timeoutId
+				logger.log container_id: containerId, exitCode: res.StatusCode, "docker container returned"
+				callback null, res.StatusCode
+
+	destroyContainer: (containerName, containerId, shouldForce, callback = (error) ->) ->
+		# We want the containerName for the lock and, ideally, the
+		# containerId to delete.  There is a bug in the docker.io module
+		# where if you delete by name and there is an error, it throws an
+		# async exception, but if you delete by id it just does a normal
+		# error callback. We fall back to deleting by name if no id is
+		# supplied.
+		LockManager.runWithLock containerName, (releaseLock) ->
+			DockerRunner._destroyContainer containerId or containerName, shouldForce, releaseLock
+		, callback
+
+	_destroyContainer: (containerId, shouldForce, callback = (error) ->) ->
+		logger.log container_id: containerId, "destroying docker container"
+		container = dockerode.getContainer(containerId)
+		container.remove {force: shouldForce == true}, (error) ->
+			if error? and error?.statusCode == 404
+				logger.warn err: error, container_id: containerId, "container not found, continuing"
+				error = null
+			if error?
+				logger.error err: error, container_id: containerId, "error destroying container"
+			else
+				logger.log container_id: containerId, "destroyed container"
+			callback(error)
+
+	# handle expiry of docker containers
+
+	MAX_CONTAINER_AGE: Settings.clsi.docker.maxContainerAge or oneHour = 60 * 60 * 1000
+
+	examineOldContainer: (container, callback = (error, name, id, ttl)->) ->
+		name = container.Name or container.Names?[0]
+		created = container.Created * 1000 # creation time is returned in seconds
+		now = Date.now()
+		age = now - created
+		maxAge = DockerRunner.MAX_CONTAINER_AGE
+		ttl = maxAge - age
+		logger.log {containerName: name, created: created, now: now, age: age, maxAge: maxAge, ttl: ttl}, "checking whether to destroy container"
+		callback(null, name, container.Id, ttl)
+
+	destroyOldContainers: (callback = (error) ->) ->
+		dockerode.listContainers all: true, (error, containers) ->
+			return callback(error) if error?
+			jobs = []
+			for container in containers or []
+				do (container) ->
+					DockerRunner.examineOldContainer container, (err, name, id, ttl) ->
+						if name.slice(0, 9) == '/project-' && ttl <= 0
+							jobs.push	(cb) ->
+								DockerRunner.destroyContainer name, id, false, () -> cb()
+								# Ignore errors because some containers get stuck but
+								# will be destroyed next time
+			async.series jobs, callback
+
+	startContainerMonitor: () ->
+		logger.log {maxAge: DockerRunner.MAX_CONTAINER_AGE}, "starting container expiry"
+		# randomise the start time
+		randomDelay = Math.floor(Math.random() * 5 * 60 * 1000)
+		setTimeout () ->
+			setInterval () ->
+				DockerRunner.destroyOldContainers()
+			, oneHour = 60 * 60 * 1000
+		, randomDelay
+
+DockerRunner.startContainerMonitor()

services/clsi/app/coffee/LatexRunner.coffee

@@ -2,7 +2,7 @@ Path = require "path"
 Settings = require "settings-sharelatex"
 logger = require "logger-sharelatex"
 Metrics = require "./Metrics"
-CommandRunner = require(Settings.clsi?.commandRunner or "./CommandRunner")
+CommandRunner = require "./CommandRunner"
 
 ProcessTable = {}  # table of currently running jobs (pids or docker container names)
 

services/clsi/app/coffee/LocalCommandRunner.coffee

@@ -0,0 +1,44 @@
+spawn = require("child_process").spawn
+logger = require "logger-sharelatex"
+
+logger.info "using standard command runner"
+
+module.exports = CommandRunner =
+	run: (project_id, command, directory, image, timeout, environment, callback = (error) ->) ->
+		command = (arg.replace('$COMPILE_DIR', directory) for arg in command)
+		logger.log project_id: project_id, command: command, directory: directory, "running command"
+		logger.warn "timeouts and sandboxing are not enabled with CommandRunner"
+
+		# merge environment settings
+		env = {}
+		env[key] = value for key, value of process.env
+		env[key] = value for key, value of environment
+
+		# run command as detached process so it has its own process group (which can be killed if needed)
+		proc = spawn command[0], command.slice(1), stdio: "inherit", cwd: directory, detached: true, env: env
+
+		proc.on "error", (err)->
+			logger.err err:err, project_id:project_id, command: command, directory: directory, "error running command"
+			callback(err)
+
+		proc.on "close", (code, signal) ->
+			logger.info code:code, signal:signal, project_id:project_id, "command exited"
+			if signal is 'SIGTERM' # signal from kill method below
+				err = new Error("terminated")
+				err.terminated = true
+				return callback(err)
+			else if code is 1 # exit status from chktex
+				err = new Error("exited")
+				err.code = code
+				return callback(err)
+			else
+				callback()
+
+		return proc.pid # return process id to allow job to be killed if necessary
+
+	kill: (pid, callback = (error) ->) ->
+		try
+			process.kill -pid # kill all processes in group
+		catch err
+			return callback(err)
+		callback()

services/clsi/config/settings.defaults.coffee

@@ -29,9 +29,9 @@ module.exports =
 	project_cache_length_ms: 1000 * 60 * 60 * 24
 	parallelFileDownloads:1
 
-if process.env["COMMAND_RUNNER"]
+if process.env["DOCKER_RUNNER"]
 	module.exports.clsi =
-		commandRunner: process.env["COMMAND_RUNNER"]
+		dockerRunner: process.env["DOCKER_RUNNER"] == "true"
 		docker:
 			image: process.env["TEXLIVE_IMAGE"] or "quay.io/sharelatex/texlive-full:2017.1"
 			env:

services/clsi/docker-compose-config.yml

@@ -6,12 +6,11 @@ services:
       TEXLIVE_IMAGE: quay.io/sharelatex/texlive-full:2017.1
       TEXLIVE_IMAGE_USER: root
       SHARELATEX_CONFIG: /app/config/settings.defaults.coffee
-      COMMAND_RUNNER: docker-runner-sharelatex
+      DOCKER_RUNNER: "true"
       COMPILES_HOST_DIR: $PWD/compiles
       SYNCTEX_BIN_HOST_PATH: $PWD/bin/synctex
     volumes:
       - /var/run/docker.sock:/var/run/docker.sock
-      - ./docker-runner:/app/node_modules/docker-runner-sharelatex
       - ./compiles:/app/compiles
       
   ci:
@@ -19,10 +18,9 @@ services:
       TEXLIVE_IMAGE: quay.io/sharelatex/texlive-full:2017.1
       TEXLIVE_IMAGE_USER: root
       SHARELATEX_CONFIG: /app/config/settings.defaults.coffee
-      COMMAND_RUNNER: docker-runner-sharelatex
+      DOCKER_RUNNER: "true"
       COMPILES_HOST_DIR: $PWD/compiles
       SYNCTEX_BIN_HOST_PATH: $PWD/bin/synctex
     volumes:
       - /var/run/docker.sock:/var/run/docker.sock:rw
-      - ./docker-runner:/app/node_modules/docker-runner-sharelatex
       - ./compiles:/app/compiles

services/clsi/package.json

@@ -17,7 +17,7 @@
     "compile": "npm run compile:app && npm run compile:test:acceptance && npm run compile:test:smoke", 
     "start": "npm run compile:app && node app.js", 
     "test:acceptance:_run": "mocha --recursive --reporter spec --timeout 15000 --exit $@ test/acceptance/js", 
-    "test:unit:_run": "mocha --recursive --reporter spec $@ test/unit/js", 
+    "test:unit:_run": "mocha --recursive --exit --reporter spec $@ test/unit/js", 
     "test:unit": "npm run compile:app && npm run compile:unit_tests && npm run test:unit:_run -- $@", 
     "compile:unit_tests": "[ -e test/unit ] && coffee -o test/unit/js -c test/unit/coffee || echo 'No unit tests to compile'", 
     "compile:acceptance_tests": "[ -e test/acceptance ] && coffee -o test/acceptance/js -c test/acceptance/coffee || echo 'No acceptance tests to compile'", 

services/clsi/test/acceptance/coffee/SimpleLatexFileTests.coffee

@@ -21,7 +21,6 @@ describe "Simple LaTeX file", ->
 
 	it "should return the PDF", ->
 		pdf = Client.getOutputFile(@body, "pdf")
-		console.log @body
 		pdf.type.should.equal "pdf"
 		
 	it "should return the log", ->

services/clsi/test/acceptance/coffee/TimeoutTests.coffee

@@ -23,7 +23,6 @@ describe "Timed out compile", ->
 			Client.compile @project_id, @request, (@error, @res, @body) => done()
 
 	it "should return a timeout error", ->
-		console.log @body.compile, "!!!1111"
 		@body.compile.error.should.equal "container timed out"
 
 	it "should return a timedout status", ->

services/clsi/test/acceptance/coffee/helpers/Client.coffee

@@ -11,7 +11,6 @@ module.exports = Client =
 		Math.random().toString(16).slice(2)
 
 	compile: (project_id, data, callback = (error, res, body) ->) ->
-		console.log("#{@host}/project/#{project_id}/compile")
 		request.post {
 			url: "#{@host}/project/#{project_id}/compile"
 			json:

services/clsi/test/unit/coffee/CompileManagerTests.coffee

@@ -293,8 +293,6 @@ describe "CompileManager", ->
 			# 		.should.equal true
 
 			it "should call the callback with the parsed output", ->
-				console.log(@file_name, @line, @column)
-				console.log @callback.args[0]
 				@callback
 					.calledWith(null, [{
 						file: @file_name

services/clsi/test/unit/coffee/DockerLockManagerTests.coffee

@@ -0,0 +1,145 @@
+SandboxedModule = require('sandboxed-module')
+sinon = require('sinon')
+require('chai').should()
+require "coffee-script"
+modulePath = require('path').join __dirname, '../../../app/coffee/DockerLockManager'
+
+describe "LockManager", ->
+	beforeEach ->
+		@LockManager = SandboxedModule.require modulePath, requires:
+			"settings-sharelatex": @Settings =
+				clsi: docker: {}
+			"logger-sharelatex": @logger = { log: sinon.stub(), error: sinon.stub() }
+
+	describe "runWithLock", ->
+		describe "with a single lock", ->
+			beforeEach (done) ->
+				@callback  = sinon.stub()
+				@LockManager.runWithLock "lock-one", (releaseLock) ->
+					setTimeout () ->
+						releaseLock(null, "hello", "world")
+					, 100
+				, (err, args...) =>
+					@callback(err,args...)
+					done()
+
+			it "should call the callback", ->
+				@callback.calledWith(null,"hello","world").should.equal true
+
+		describe "with two locks", ->
+			beforeEach (done) ->
+				@callback1 = sinon.stub()
+				@callback2 = sinon.stub()
+				@LockManager.runWithLock "lock-one", (releaseLock) ->
+					setTimeout () ->
+						releaseLock(null, "hello", "world","one")
+					, 100
+				, (err, args...) =>
+					@callback1(err,args...)
+				@LockManager.runWithLock "lock-two", (releaseLock) ->
+					setTimeout () ->
+						releaseLock(null, "hello", "world","two")
+					, 200
+				, (err, args...) =>
+					@callback2(err,args...)
+					done()
+
+			it "should call the first callback", ->
+				@callback1.calledWith(null,"hello","world","one").should.equal true
+
+			it "should call the second callback", ->
+				@callback2.calledWith(null,"hello","world","two").should.equal true
+
+		describe "with lock contention", ->
+			describe "where the first lock is released quickly", ->
+				beforeEach (done) ->
+					@LockManager.MAX_LOCK_WAIT_TIME = 1000
+					@LockManager.LOCK_TEST_INTERVAL = 100
+					@callback1 = sinon.stub()
+					@callback2 = sinon.stub()
+					@LockManager.runWithLock "lock", (releaseLock) ->
+						setTimeout () ->
+							releaseLock(null, "hello", "world","one")
+						, 100
+					, (err, args...) =>
+						@callback1(err,args...)
+					@LockManager.runWithLock "lock", (releaseLock) ->
+						setTimeout () ->
+							releaseLock(null, "hello", "world","two")
+						, 200
+					, (err, args...) =>
+						@callback2(err,args...)
+						done()
+
+				it "should call the first callback", ->
+					@callback1.calledWith(null,"hello","world","one").should.equal true
+
+				it "should call the second callback", ->
+					@callback2.calledWith(null,"hello","world","two").should.equal true
+
+			describe "where the first lock is held longer than the waiting time", ->
+				beforeEach (done) ->
+					@LockManager.MAX_LOCK_HOLD_TIME = 10000
+					@LockManager.MAX_LOCK_WAIT_TIME = 1000
+					@LockManager.LOCK_TEST_INTERVAL = 100
+					@callback1 = sinon.stub()
+					@callback2 = sinon.stub()
+					doneOne = doneTwo = false
+					finish = (key) ->
+						doneOne = true if key is 1
+						doneTwo = true if key is 2
+						done() if doneOne and doneTwo
+					@LockManager.runWithLock "lock", (releaseLock) ->
+						setTimeout () ->
+							releaseLock(null, "hello", "world","one")
+						, 1100
+					, (err, args...) =>
+						@callback1(err,args...)
+						finish(1)
+					@LockManager.runWithLock "lock", (releaseLock) ->
+						setTimeout () ->
+							releaseLock(null, "hello", "world","two")
+						, 100
+					, (err, args...) =>
+						@callback2(err,args...)
+						finish(2)
+
+				it "should call the first callback", ->
+					@callback1.calledWith(null,"hello","world","one").should.equal true
+
+				it "should call the second callback with an error", ->
+					error = sinon.match.instanceOf Error
+					@callback2.calledWith(error).should.equal true
+
+			describe "where the first lock is held longer than the max holding time", ->
+				beforeEach (done) ->
+					@LockManager.MAX_LOCK_HOLD_TIME = 1000
+					@LockManager.MAX_LOCK_WAIT_TIME = 2000
+					@LockManager.LOCK_TEST_INTERVAL = 100
+					@callback1 = sinon.stub()
+					@callback2 = sinon.stub()
+					doneOne = doneTwo = false
+					finish = (key) ->
+						doneOne = true if key is 1
+						doneTwo = true if key is 2
+						done() if doneOne and doneTwo
+					@LockManager.runWithLock "lock", (releaseLock) ->
+						setTimeout () ->
+							releaseLock(null, "hello", "world","one")
+						, 1500
+					, (err, args...) =>
+						@callback1(err,args...)
+						finish(1)
+					@LockManager.runWithLock "lock", (releaseLock) ->
+						setTimeout () ->
+							releaseLock(null, "hello", "world","two")
+						, 100
+					, (err, args...) =>
+						@callback2(err,args...)
+						finish(2)
+
+				it "should call the first callback", ->
+					@callback1.calledWith(null,"hello","world","one").should.equal true
+
+				it "should call the second callback", ->
+					@callback2.calledWith(null,"hello","world","two").should.equal true

services/clsi/test/unit/coffee/DockerRunnerTests.coffee

@@ -0,0 +1,499 @@
+SandboxedModule = require('sandboxed-module')
+sinon = require('sinon')
+require('chai').should()
+expect = require('chai').expect
+require "coffee-script"
+modulePath = require('path').join __dirname, '../../../app/coffee/DockerRunner'
+Path = require "path"
+
+describe "DockerRunner", ->
+	beforeEach ->
+		@container = container = {}
+		@DockerRunner = SandboxedModule.require modulePath, requires:
+			"settings-sharelatex": @Settings =
+				clsi: docker: {}
+				path: {}
+			"logger-sharelatex": @logger = {
+				log: sinon.stub(),
+				error: sinon.stub(),
+				info: sinon.stub(),
+				warn: sinon.stub()
+			}
+			"dockerode": class Docker
+				getContainer: sinon.stub().returns(container)
+				createContainer: sinon.stub().yields(null, container)
+				listContainers: sinon.stub()
+			"fs": @fs = { stat: sinon.stub().yields(null,{isDirectory:()->true}) }
+			"./Metrics":
+				Timer: class Timer
+					done: () ->
+			"./LockManager":
+				runWithLock: (key, runner, callback) -> runner(callback)
+		@Docker = Docker
+		@getContainer = Docker::getContainer
+		@createContainer = Docker::createContainer
+		@listContainers = Docker::listContainers
+
+		@directory = "/local/compile/directory"
+		@mainFile  = "main-file.tex"
+		@compiler  = "pdflatex"
+		@image     = "example.com/sharelatex/image:2016.2"
+		@env       = {}
+		@callback  = sinon.stub()
+		@project_id = "project-id-123"
+		@volumes =
+			"/local/compile/directory": "/compile"
+		@Settings.clsi.docker.image = @defaultImage = "default-image"
+		@Settings.clsi.docker.env   = PATH: "mock-path"
+
+	describe "run", ->
+		beforeEach (done)->
+			@DockerRunner._getContainerOptions = sinon.stub().returns(@options = {mockoptions: "foo"})
+			@DockerRunner._fingerprintContainer = sinon.stub().returns(@fingerprint = "fingerprint")
+
+			@name = "project-#{@project_id}-#{@fingerprint}"
+
+			@command = ["mock", "command", "--outdir=$COMPILE_DIR"]
+			@command_with_dir = ["mock", "command", "--outdir=/compile"]
+			@timeout = 42000
+			done()
+
+		describe "successfully", ->
+			beforeEach (done)->
+				@DockerRunner._runAndWaitForContainer = sinon.stub().callsArgWith(3, null, @output = "mock-output")
+				@DockerRunner.run @project_id, @command, @directory, @image, @timeout, @env, (err, output)=>
+					@callback(err, output)
+					done()
+
+			it "should generate the options for the container", ->
+				@DockerRunner._getContainerOptions
+					.calledWith(@command_with_dir, @image, @volumes, @timeout)
+					.should.equal true
+
+			it "should generate the fingerprint from the returned options", ->
+				@DockerRunner._fingerprintContainer
+					.calledWith(@options)
+					.should.equal true
+
+			it "should do the run", ->
+				@DockerRunner._runAndWaitForContainer	
+					.calledWith(@options, @volumes, @timeout)		
+					.should.equal true
+
+			it "should call the callback", ->
+				@callback.calledWith(null, @output).should.equal true
+
+		describe 'when path.sandboxedCompilesHostDir is set', ->
+
+			beforeEach ->
+				@Settings.path.sandboxedCompilesHostDir = '/some/host/dir/compiles'
+				@directory = '/var/lib/sharelatex/data/compiles/xyz'
+				@DockerRunner._runAndWaitForContainer = sinon.stub().callsArgWith(3, null, @output = "mock-output")
+				@DockerRunner.run @project_id, @command, @directory, @image, @timeout, @env, @callback
+
+			it 'should re-write the bind directory', ->
+				volumes = @DockerRunner._runAndWaitForContainer.lastCall.args[1]
+				expect(volumes).to.deep.equal {
+					'/some/host/dir/compiles/xyz': '/compile'
+				}
+
+			it "should call the callback", ->
+				@callback.calledWith(null, @output).should.equal true
+
+		describe "when the run throws an error", ->
+			beforeEach ->
+				firstTime = true
+				@output = "mock-output"
+				@DockerRunner._runAndWaitForContainer = (options, volumes, timeout, callback = (error, output)->) =>
+					if firstTime
+						firstTime = false
+						callback new Error("HTTP code is 500 which indicates error: server error")
+					else
+						callback(null, @output)
+				sinon.spy @DockerRunner, "_runAndWaitForContainer"
+				@DockerRunner.destroyContainer = sinon.stub().callsArg(3)
+				@DockerRunner.run @project_id, @command, @directory, @image, @timeout, @env, @callback
+
+			it "should do the run twice", ->
+				@DockerRunner._runAndWaitForContainer	
+					.calledTwice.should.equal true
+
+			it "should destroy the container in between", ->
+				@DockerRunner.destroyContainer
+					.calledWith(@name, null)
+					.should.equal true
+
+			it "should call the callback", ->
+				@callback.calledWith(null, @output).should.equal true
+		
+		describe "with no image", ->
+			beforeEach ->
+				@DockerRunner._runAndWaitForContainer = sinon.stub().callsArgWith(3, null, @output = "mock-output")
+				@DockerRunner.run @project_id, @command, @directory, null, @timeout, @env, @callback
+
+			it "should use the default image", ->
+				@DockerRunner._getContainerOptions
+					.calledWith(@command_with_dir, @defaultImage, @volumes, @timeout)
+					.should.equal true
+
+	describe "_runAndWaitForContainer", ->
+		beforeEach ->
+			@options = {mockoptions: "foo", name: @name = "mock-name"}
+			@DockerRunner.startContainer = (options, volumes, attachStreamHandler, callback) =>
+				attachStreamHandler(null, @output = "mock-output")
+				callback(null, @containerId = "container-id")
+			sinon.spy @DockerRunner, "startContainer"
+			@DockerRunner.waitForContainer = sinon.stub().callsArgWith(2, null, @exitCode = 42)
+			@DockerRunner._runAndWaitForContainer @options, @volumes, @timeout, @callback
+
+		it "should create/start the container", ->
+			@DockerRunner.startContainer
+				.calledWith(@options, @volumes)
+				.should.equal true
+
+		it "should wait for the container to finish", ->
+			@DockerRunner.waitForContainer
+				.calledWith(@name, @timeout)
+				.should.equal true
+
+		it "should call the callback with the output", ->
+			@callback.calledWith(null, @output).should.equal true
+
+	describe "startContainer", ->
+		beforeEach ->
+			@attachStreamHandler = sinon.stub()
+			@attachStreamHandler.cock = true
+			@options = {mockoptions: "foo", name: "mock-name"}
+			@container.inspect = sinon.stub().callsArgWith(0)
+			@DockerRunner.attachToContainer = (containerId, attachStreamHandler, cb)=> 
+				attachStreamHandler()
+				cb()
+			sinon.spy @DockerRunner, "attachToContainer"
+
+
+
+		describe "when the container exists", ->
+			beforeEach ->
+				@container.inspect = sinon.stub().callsArgWith(0)
+				@container.start = sinon.stub().yields()
+
+				@DockerRunner.startContainer @options, @volumes, @callback, ->
+
+			it "should start the container with the given name", ->
+				@getContainer
+					.calledWith(@options.name)
+					.should.equal true
+				@container.start
+					.called
+					.should.equal true
+
+			it "should not try to create the container", ->
+				@createContainer.called.should.equal false
+			
+			it "should attach to the container", ->
+				@DockerRunner.attachToContainer.called.should.equal true
+
+			it "should call the callback", ->
+				@callback.called.should.equal true
+	
+			it "should attach before the container starts", ->
+				sinon.assert.callOrder(@DockerRunner.attachToContainer, @container.start)
+						
+		describe "when the container does not exist", ->
+			beforeEach ()->
+				exists = false
+				@container.start = sinon.stub().yields()
+				@container.inspect = sinon.stub().callsArgWith(0, {statusCode:404})
+				@DockerRunner.startContainer @options, @volumes, @attachStreamHandler, @callback
+
+			it "should create the container", ->
+				@createContainer
+					.calledWith(@options)
+					.should.equal true
+
+			it "should call the callback and stream handler", ->
+				@attachStreamHandler.called.should.equal true
+				@callback.called.should.equal true
+			
+			it "should attach to the container", ->
+				@DockerRunner.attachToContainer.called.should.equal true
+
+			it "should attach before the container starts", ->
+				sinon.assert.callOrder(@DockerRunner.attachToContainer, @container.start)
+
+
+		describe "when the container is already running", ->
+			beforeEach ->
+				error = new Error("HTTP code is 304 which indicates error: server error - start: Cannot start container #{@name}: The container MOCKID is already running.")
+				error.statusCode = 304
+				@container.start = sinon.stub().yields(error)
+				@container.inspect = sinon.stub().callsArgWith(0)
+				@DockerRunner.startContainer @options, @volumes, @attachStreamHandler, @callback
+
+			it "should not try to create the container", ->
+				@createContainer.called.should.equal false
+
+			it "should call the callback  and stream handler without an error", ->
+				@attachStreamHandler.called.should.equal true
+				@callback.called.should.equal true
+
+		describe "when a volume does not exist", ->
+			beforeEach ()->
+				@fs.stat = sinon.stub().yields(new Error("no such path"))
+				@DockerRunner.startContainer @options, @volumes, @attachStreamHandler, @callback
+
+			it "should not try to create the container", ->
+				@createContainer.called.should.equal false
+
+			it "should call the callback with an error", ->
+				@callback.calledWith(new Error()).should.equal true
+
+		describe "when a volume exists but is not a directory", ->
+			beforeEach ->
+				@fs.stat = sinon.stub().yields(null, {isDirectory: () -> return false})
+				@DockerRunner.startContainer @options, @volumes, @attachStreamHandler, @callback
+
+			it "should not try to create the container", ->
+				@createContainer.called.should.equal false
+
+			it "should call the callback with an error", ->
+				@callback.calledWith(new Error()).should.equal true
+
+		describe "when a volume does not exist, but sibling-containers are used", ->
+			beforeEach ->
+				@fs.stat = sinon.stub().yields(new Error("no such path"))
+				@Settings.path.sandboxedCompilesHostDir = '/some/path'
+				@container.start = sinon.stub().yields()
+				@DockerRunner.startContainer @options, @volumes, @callback
+
+			afterEach ->
+				delete @Settings.path.sandboxedCompilesHostDir
+
+			it "should start the container with the given name", ->
+				@getContainer
+					.calledWith(@options.name)
+					.should.equal true
+				@container.start
+					.called
+					.should.equal true
+
+			it "should not try to create the container", ->
+				@createContainer.called.should.equal false
+
+			it "should call the callback", ->
+				@callback.called.should.equal true
+				@callback.calledWith(new Error()).should.equal false
+
+		describe "when the container tries to be created, but already has been (race condition)", ->
+
+	describe "waitForContainer", ->
+		beforeEach ->
+			@containerId = "container-id"
+			@timeout = 5000
+			@container.wait = sinon.stub().yields(null, StatusCode: @statusCode = 42)
+			@container.kill = sinon.stub().yields()
+			
+		describe "when the container returns in time", ->
+			beforeEach ->
+				@DockerRunner.waitForContainer @containerId, @timeout, @callback
+
+			it "should wait for the container", ->
+				@getContainer
+					.calledWith(@containerId)
+					.should.equal true
+				@container.wait
+					.called
+					.should.equal true
+
+			it "should call the callback with the exit", ->
+				@callback
+					.calledWith(null, @statusCode)
+					.should.equal true
+
+		describe "when the container does not return before the timeout", ->
+			beforeEach (done) ->
+				@container.wait = (callback = (error, exitCode) ->) ->
+					setTimeout () ->
+						callback(null, StatusCode: 42)
+					, 100
+				@timeout = 5
+				@DockerRunner.waitForContainer @containerId, @timeout, (args...) =>
+					@callback(args...)
+					done()
+
+			it "should call kill on the container", ->
+				@getContainer
+					.calledWith(@containerId)
+					.should.equal true
+				@container.kill
+					.called
+					.should.equal true
+
+			it "should call the callback with an error", ->
+				error = new Error("container timed out")
+				error.timedout = true
+				@callback
+					.calledWith(error)
+					.should.equal true
+
+	describe "destroyOldContainers", ->
+		beforeEach (done) ->
+			oneHourInSeconds = 60 * 60
+			oneHourInMilliseconds = oneHourInSeconds * 1000
+			nowInSeconds = Date.now()/1000
+			@containers = [{
+				Name: "/project-old-container-name"
+				Id: "old-container-id"
+				Created: nowInSeconds - oneHourInSeconds - 100
+			}, {
+				Name: "/project-new-container-name"
+				Id: "new-container-id"
+				Created: nowInSeconds - oneHourInSeconds + 100
+			}, {
+				Name: "/totally-not-a-project-container"
+				Id: "some-random-id"
+				Created: nowInSeconds - (2 * oneHourInSeconds )
+			}]
+			@DockerRunner.MAX_CONTAINER_AGE = oneHourInMilliseconds
+			@listContainers.callsArgWith(1, null, @containers)
+			@DockerRunner.destroyContainer = sinon.stub().callsArg(3)
+			@DockerRunner.destroyOldContainers (error) =>
+				@callback(error)
+				done()
+
+		it "should list all containers", ->
+			@listContainers
+				.calledWith(all: true)
+				.should.equal true
+
+		it "should destroy old containers", ->
+			@DockerRunner.destroyContainer
+				.callCount
+				.should.equal 1
+			@DockerRunner.destroyContainer
+				.calledWith("/project-old-container-name", "old-container-id")
+				.should.equal true
+
+		it "should not destroy new containers", ->
+			@DockerRunner.destroyContainer
+				.calledWith("/project-new-container-name", "new-container-id")
+				.should.equal false
+
+		it "should not destroy non-project containers", ->
+			@DockerRunner.destroyContainer
+				.calledWith("/totally-not-a-project-container", "some-random-id")
+				.should.equal false
+
+		it "should callback the callback", ->
+			@callback.called.should.equal true
+
+
+	describe '_destroyContainer', ->
+		beforeEach ->
+			@containerId = 'some_id'
+			@fakeContainer =
+				remove: sinon.stub().callsArgWith(1, null)
+			@Docker::getContainer = sinon.stub().returns(@fakeContainer)
+
+		it 'should get the container', (done) ->
+			@DockerRunner._destroyContainer @containerId, false, (err) =>
+				@Docker::getContainer.callCount.should.equal 1
+				@Docker::getContainer.calledWith(@containerId).should.equal true
+				done()
+
+		it 'should try to force-destroy the container when shouldForce=true', (done) ->
+			@DockerRunner._destroyContainer @containerId, true, (err) =>
+				@fakeContainer.remove.callCount.should.equal 1
+				@fakeContainer.remove.calledWith({force: true}).should.equal true
+				done()
+
+		it 'should not try to force-destroy the container when shouldForce=false', (done) ->
+			@DockerRunner._destroyContainer @containerId, false, (err) =>
+				@fakeContainer.remove.callCount.should.equal 1
+				@fakeContainer.remove.calledWith({force: false}).should.equal true
+				done()
+
+		it 'should not produce an error', (done) ->
+			@DockerRunner._destroyContainer @containerId, false, (err) =>
+				expect(err).to.equal null
+				done()
+
+		describe 'when the container is already gone', ->
+			beforeEach ->
+				@fakeError = new Error('woops')
+				@fakeError.statusCode = 404
+				@fakeContainer =
+					remove: sinon.stub().callsArgWith(1, @fakeError)
+				@Docker::getContainer = sinon.stub().returns(@fakeContainer)
+
+			it 'should not produce an error', (done) ->
+				@DockerRunner._destroyContainer @containerId, false, (err) =>
+					expect(err).to.equal null
+					done()
+
+		describe 'when container.destroy produces an error', (done) ->
+			beforeEach ->
+				@fakeError = new Error('woops')
+				@fakeError.statusCode = 500
+				@fakeContainer =
+					remove: sinon.stub().callsArgWith(1, @fakeError)
+				@Docker::getContainer = sinon.stub().returns(@fakeContainer)
+
+			it 'should produce an error', (done) ->
+				@DockerRunner._destroyContainer @containerId, false, (err) =>
+					expect(err).to.not.equal null
+					expect(err).to.equal @fakeError
+					done()
+
+
+	describe 'kill', ->
+		beforeEach ->
+			@containerId = 'some_id'
+			@fakeContainer =
+				kill: sinon.stub().callsArgWith(0, null)
+			@Docker::getContainer = sinon.stub().returns(@fakeContainer)
+
+		it 'should get the container', (done) ->
+			@DockerRunner.kill @containerId, (err) =>
+				@Docker::getContainer.callCount.should.equal 1
+				@Docker::getContainer.calledWith(@containerId).should.equal true
+				done()
+
+		it 'should try to force-destroy the container', (done) ->
+			@DockerRunner.kill @containerId, (err) =>
+				@fakeContainer.kill.callCount.should.equal 1
+				done()
+
+		it 'should not produce an error', (done) ->
+			@DockerRunner.kill @containerId, (err) =>
+				expect(err).to.equal undefined
+				done()
+
+		describe 'when the container is not actually running', ->
+			beforeEach ->
+				@fakeError = new Error('woops')
+				@fakeError.statusCode = 500
+				@fakeError.message = 'Cannot kill container <whatever> is not running'
+				@fakeContainer =
+					kill: sinon.stub().callsArgWith(0, @fakeError)
+				@Docker::getContainer = sinon.stub().returns(@fakeContainer)
+
+			it 'should not produce an error', (done) ->
+				@DockerRunner.kill @containerId, (err) =>
+					expect(err).to.equal undefined
+					done()
+
+		describe 'when container.kill produces a legitimate error', (done) ->
+			beforeEach ->
+				@fakeError = new Error('woops')
+				@fakeError.statusCode = 500
+				@fakeError.message = 'Totally legitimate reason to throw an error'
+				@fakeContainer =
+					kill: sinon.stub().callsArgWith(0, @fakeError)
+				@Docker::getContainer = sinon.stub().returns(@fakeContainer)
+
+			it 'should produce an error', (done) ->
+				@DockerRunner.kill @containerId, (err) =>
+					expect(err).to.not.equal undefined
+					expect(err).to.equal @fakeError
+					done()

services/clsi/test/unit/coffee/LockManagerTests.coffee

@@ -5,7 +5,7 @@ modulePath = require('path').join __dirname, '../../../app/js/LockManager'
 Path = require "path"
 Errors = require "../../../app/js/Errors"
 
-describe "LockManager", ->
+describe "DockerLockManager", ->
 	beforeEach ->
 		@LockManager = SandboxedModule.require modulePath, requires:
 			"settings-sharelatex": {}