Merge pull request #5 from overleaf/file-not-in-the-current-commit

Try to download file if it's not in the git tree
This commit is contained in:
Marc Egea i Sala 2015-11-24 13:22:46 +00:00
commit 0390f80aaa
53 changed files with 737 additions and 140 deletions

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@ -17,7 +17,7 @@
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<root url="jar://$MAVEN_REPOSITORY$/org/bouncycastle/bcmail-jdk15on/1.52/bcmail-jdk15on-1.52-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/bouncycastle/bcmail-jdk15on/1.52/bcmail-jdk15on-1.52-sources.jar!/" />
</SOURCES>
</library>
</component>

View file

@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.bouncycastle:bcpkix-jdk15on:1.52">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/bouncycastle/bcpkix-jdk15on/1.52/bcpkix-jdk15on-1.52.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/bouncycastle/bcpkix-jdk15on/1.52/bcpkix-jdk15on-1.52-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/bouncycastle/bcpkix-jdk15on/1.52/bcpkix-jdk15on-1.52-sources.jar!/" />
</SOURCES>
</library>
</component>

View file

@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.bouncycastle:bcprov-jdk15on:1.52">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/bouncycastle/bcprov-jdk15on/1.52/bcprov-jdk15on-1.52.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/bouncycastle/bcprov-jdk15on/1.52/bcprov-jdk15on-1.52-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/bouncycastle/bcprov-jdk15on/1.52/bcprov-jdk15on-1.52-sources.jar!/" />
</SOURCES>
</library>
</component>

View file

@ -1,13 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.hamcrest:hamcrest-core:1.1">
<library name="Maven: org.hamcrest:hamcrest-core:1.3">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/hamcrest/hamcrest-core/1.1/hamcrest-core-1.1.jar!/" />
<root url="jar://$MAVEN_REPOSITORY$/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/hamcrest/hamcrest-core/1.1/hamcrest-core-1.1-javadoc.jar!/" />
<root url="jar://$MAVEN_REPOSITORY$/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/hamcrest/hamcrest-core/1.1/hamcrest-core-1.1-sources.jar!/" />
<root url="jar://$MAVEN_REPOSITORY$/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3-sources.jar!/" />
</SOURCES>
</library>
</component>

View file

@ -1,13 +0,0 @@
<component name="libraryTable">
<library name="Maven: org.jmock:jmock-legacy:2.6.0">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/jmock/jmock-legacy/2.6.0/jmock-legacy-2.6.0.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/jmock/jmock-legacy/2.6.0/jmock-legacy-2.6.0-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/jmock/jmock-legacy/2.6.0/jmock-legacy-2.6.0-sources.jar!/" />
</SOURCES>
</library>
</component>

View file

@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.json:json:20090211">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/json/json/20090211/json-20090211.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/json/json/20090211/json-20090211-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/json/json/20090211/json-20090211-sources.jar!/" />
</SOURCES>
</library>
</component>

View file

@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.mock-server:mockserver-client-java:3.10.1">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/mock-server/mockserver-client-java/3.10.1/mockserver-client-java-3.10.1.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/mock-server/mockserver-client-java/3.10.1/mockserver-client-java-3.10.1-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/mock-server/mockserver-client-java/3.10.1/mockserver-client-java-3.10.1-sources.jar!/" />
</SOURCES>
</library>
</component>

View file

@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.mock-server:mockserver-core:3.10.1">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/mock-server/mockserver-core/3.10.1/mockserver-core-3.10.1.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/mock-server/mockserver-core/3.10.1/mockserver-core-3.10.1-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/mock-server/mockserver-core/3.10.1/mockserver-core-3.10.1-sources.jar!/" />
</SOURCES>
</library>
</component>

View file

@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.mock-server:mockserver-logging:3.10.1">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/mock-server/mockserver-logging/3.10.1/mockserver-logging-3.10.1.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/mock-server/mockserver-logging/3.10.1/mockserver-logging-3.10.1-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/mock-server/mockserver-logging/3.10.1/mockserver-logging-3.10.1-sources.jar!/" />
</SOURCES>
</library>
</component>

View file

@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.mock-server:mockserver-netty:3.10.1">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/mock-server/mockserver-netty/3.10.1/mockserver-netty-3.10.1.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/mock-server/mockserver-netty/3.10.1/mockserver-netty-3.10.1-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/mock-server/mockserver-netty/3.10.1/mockserver-netty-3.10.1-sources.jar!/" />
</SOURCES>
</library>
</component>

View file

@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.mozilla:rhino:1.7R4">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/mozilla/rhino/1.7R4/rhino-1.7R4.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/mozilla/rhino/1.7R4/rhino-1.7R4-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/mozilla/rhino/1.7R4/rhino-1.7R4-sources.jar!/" />
</SOURCES>
</library>
</component>

View file

@ -1,13 +0,0 @@
<component name="libraryTable">
<library name="Maven: org.objenesis:objenesis:1.0">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/objenesis/objenesis/1.0/objenesis-1.0.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/objenesis/objenesis/1.0/objenesis-1.0-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/objenesis/objenesis/1.0/objenesis-1.0-sources.jar!/" />
</SOURCES>
</library>
</component>

View file

@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.skyscreamer:jsonassert:1.2.3">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/skyscreamer/jsonassert/1.2.3/jsonassert-1.2.3.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/skyscreamer/jsonassert/1.2.3/jsonassert-1.2.3-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/skyscreamer/jsonassert/1.2.3/jsonassert-1.2.3-sources.jar!/" />
</SOURCES>
</library>
</component>

View file

@ -49,18 +49,14 @@
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.10</version>
<version>4.12</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.jmock</groupId>
<artifactId>jmock-junit4</artifactId>
<version>2.6.0</version>
</dependency>
<dependency>
<groupId>org.jmock</groupId>
<artifactId>jmock-legacy</artifactId>
<version>2.6.0</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty.aggregate</groupId>
@ -102,6 +98,12 @@
<artifactId>joda-time</artifactId>
<version>2.7</version>
</dependency>
<dependency>
<groupId>org.mock-server</groupId>
<artifactId>mockserver-netty</artifactId>
<version>3.10.1</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>

View file

@ -10,6 +10,7 @@ import uk.ac.ic.wlgitbridge.data.filestore.GitDirectoryContents;
import uk.ac.ic.wlgitbridge.data.filestore.RawDirectory;
import uk.ac.ic.wlgitbridge.data.filestore.RawFile;
import uk.ac.ic.wlgitbridge.data.model.db.PersistentStore;
import uk.ac.ic.wlgitbridge.data.model.db.SqlitePersistentStore;
import uk.ac.ic.wlgitbridge.snapshot.exception.FailedConnectionException;
import uk.ac.ic.wlgitbridge.snapshot.getforversion.SnapshotAttachment;
import uk.ac.ic.wlgitbridge.snapshot.push.exception.SnapshotPostException;
@ -31,7 +32,7 @@ public class DataStore {
public DataStore(String rootGitDirectoryPath) {
rootGitDirectory = initRootGitDirectory(rootGitDirectoryPath);
persistentStore = new PersistentStore(rootGitDirectory);
persistentStore = new SqlitePersistentStore(rootGitDirectory);
List<String> excludedFromDeletion = persistentStore.getProjectNames();
excludedFromDeletion.add(".wlgb");
Util.deleteInDirectoryApartFrom(rootGitDirectory, excludedFromDeletion.toArray(new String[] {}));

View file

@ -42,9 +42,15 @@ public class ResourceFetcher {
if (contents == null) {
RawFile rawFile = new RepositoryObjectTreeWalker(repository).getDirectoryContents().getFileTable().get(path);
if (rawFile == null) {
throw new IllegalStateException("file was not in the current commit, or the git tree, yet path was not null");
Util.sout(
"WARNING: " +
"File " + path + " was not in the current commit, or the git tree, yet path was not null. " +
"File url is: " + url
);
contents = fetch(projectName, url, path);
} else {
contents = rawFile.getContents();
}
contents = rawFile.getContents();
}
}
return new RepositoryFile(newPath, contents);
@ -83,5 +89,4 @@ public class ResourceFetcher {
persistentStore.addURLIndexForProject(projectName, url, path);
return contents;
}
}

View file

@ -1,72 +1,20 @@
package uk.ac.ic.wlgitbridge.data.model.db;
import uk.ac.ic.wlgitbridge.data.model.db.sql.SQLiteWLDatabase;
import java.io.File;
import java.sql.SQLException;
import java.util.List;
/**
* Created by Winston on 19/11/14.
* Created by m on 20/11/15.
*/
public class PersistentStore {
public interface PersistentStore {
List<String> getProjectNames();
private final SQLiteWLDatabase database;
void setLatestVersionForProject(String project, int versionID);
public PersistentStore(File rootGitDirectory) {
try {
database = new SQLiteWLDatabase(rootGitDirectory);
} catch (SQLException e) {
throw new RuntimeException(e);
} catch (ClassNotFoundException e) {
throw new RuntimeException(e);
}
}
int getLatestVersionForProject(String project);
public List<String> getProjectNames() {
try {
return database.getProjectNames();
} catch (SQLException e) {
throw new RuntimeException(e);
}
}
public void setLatestVersionForProject(String project, int versionID) {
try {
database.setVersionIDForProject(project, versionID);
} catch (SQLException e) {
throw new RuntimeException(e);
}
}
void addURLIndexForProject(String projectName, String url, String path);
public int getLatestVersionForProject(String project) {
try {
return database.getVersionIDForProjectName(project);
} catch (SQLException e) {
throw new RuntimeException(e);
}
}
public void addURLIndexForProject(String projectName, String url, String path) {
try {
database.addURLIndex(projectName, url, path);
} catch (SQLException e) {
throw new RuntimeException(e);
}
}
public void deleteFilesForProject(String project, String... files) {
try {
database.deleteFilesForProject(project, files);
} catch (SQLException e) {
throw new RuntimeException(e);
}
}
public String getPathForURLInProject(String projectName, String url) {
try {
return database.getPathForURLInProject(projectName, url);
} catch (SQLException e) {
throw new RuntimeException(e);
}
}
void deleteFilesForProject(String project, String... files);
String getPathForURLInProject(String projectName, String url);
}

View file

@ -0,0 +1,78 @@
package uk.ac.ic.wlgitbridge.data.model.db;
import uk.ac.ic.wlgitbridge.data.model.db.sql.SQLiteWLDatabase;
import java.io.File;
import java.sql.SQLException;
import java.util.List;
/**
* Created by Winston on 19/11/14.
*/
public class SqlitePersistentStore implements PersistentStore {
private final SQLiteWLDatabase database;
public SqlitePersistentStore(File rootGitDirectory) {
try {
database = new SQLiteWLDatabase(rootGitDirectory);
} catch (SQLException e) {
throw new RuntimeException(e);
} catch (ClassNotFoundException e) {
throw new RuntimeException(e);
}
}
@Override
public List<String> getProjectNames() {
try {
return database.getProjectNames();
} catch (SQLException e) {
throw new RuntimeException(e);
}
}
@Override
public void setLatestVersionForProject(String project, int versionID) {
try {
database.setVersionIDForProject(project, versionID);
} catch (SQLException e) {
throw new RuntimeException(e);
}
}
@Override
public int getLatestVersionForProject(String project) {
try {
return database.getVersionIDForProjectName(project);
} catch (SQLException e) {
throw new RuntimeException(e);
}
}
@Override
public void addURLIndexForProject(String projectName, String url, String path) {
try {
database.addURLIndex(projectName, url, path);
} catch (SQLException e) {
throw new RuntimeException(e);
}
}
@Override
public void deleteFilesForProject(String project, String... files) {
try {
database.deleteFilesForProject(project, files);
} catch (SQLException e) {
throw new RuntimeException(e);
}
}
@Override
public String getPathForURLInProject(String projectName, String url) {
try {
return database.getPathForURLInProject(projectName, url);
} catch (SQLException e) {
throw new RuntimeException(e);
}
}
}

View file

@ -0,0 +1,74 @@
package uk.ac.ic.wlgitbridge.data.model;
import static org.junit.Assert.*;
import static org.junit.Assert.assertEquals;
import static org.mockserver.model.HttpRequest.request;
import static org.mockserver.model.HttpResponse.response;
import org.eclipse.jgit.lib.*;
import org.eclipse.jgit.storage.file.FileRepositoryBuilder;
import org.jmock.Expectations;
import org.jmock.Mockery;
import org.hamcrest.TypeSafeMatcher;
import org.junit.Rule;
import org.junit.Test;
import org.junit.rules.TemporaryFolder;
import org.mockserver.client.server.MockServerClient;
import org.mockserver.junit.MockServerRule;
import uk.ac.ic.wlgitbridge.data.model.db.PersistentStore;
import java.io.IOException;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
/**
* Created by m on 20/11/15.
*/
public class ResourceFetcherTest {
@Rule
public MockServerRule mockServerRule = new MockServerRule(this);
private MockServerClient mockServerClient;
@Test
public void fetchesFilesThatAreMissingFromUrlStoreCache() throws IOException {
final String testProjectName = "123abc";
final String testUrl = "http://localhost:" + mockServerRule.getHttpPort() + "/123abc";
final String oldTestPath = "testPath";
final String newTestPath = "missingPath";
mockServerClient.when(
request()
.withMethod("GET")
.withPath("/123abc")
)
.respond(
response()
.withStatusCode(200)
.withBody("content")
);
final Mockery context = new Mockery();
final PersistentStore persistentStore = context.mock(PersistentStore.class);
context.checking(new Expectations() {{
// It should fetch the file once it finds it is missing.
oneOf(persistentStore).getPathForURLInProject(testProjectName, testUrl);
will(returnValue(oldTestPath));
// It should update the URL index store once it has fetched; at present, it does not actually change the stored path.
oneOf(persistentStore).addURLIndexForProject(testProjectName, testUrl, oldTestPath);
}});
ResourceFetcher resourceFetcher = new ResourceFetcher(persistentStore);
TemporaryFolder repositoryFolder = new TemporaryFolder();
repositoryFolder.create();
Repository repository = new FileRepositoryBuilder().setWorkTree(repositoryFolder.getRoot()).build();
Map<String, byte[]> fetchedUrls = new HashMap<String, byte[]>();
resourceFetcher.get(testProjectName, testUrl, newTestPath, repository, fetchedUrls);
// We don't bother caching in this case, at present.
assertEquals(0, fetchedUrls.size());
}
}

View file

@ -17,15 +17,12 @@
</content>
<orderEntry type="inheritedJdk" />
<orderEntry type="sourceFolder" forTests="false" />
<orderEntry type="library" scope="TEST" name="Maven: junit:junit:4.10" level="project" />
<orderEntry type="library" name="Maven: org.hamcrest:hamcrest-core:1.1" level="project" />
<orderEntry type="library" name="Maven: org.jmock:jmock-junit4:2.6.0" level="project" />
<orderEntry type="library" name="Maven: org.jmock:jmock:2.6.0" level="project" />
<orderEntry type="library" name="Maven: org.hamcrest:hamcrest-library:1.1" level="project" />
<orderEntry type="library" name="Maven: junit:junit-dep:4.4" level="project" />
<orderEntry type="library" name="Maven: org.jmock:jmock-legacy:2.6.0" level="project" />
<orderEntry type="library" name="Maven: org.objenesis:objenesis:1.0" level="project" />
<orderEntry type="library" name="Maven: cglib:cglib-nodep:2.1_3" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: junit:junit:4.12" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.hamcrest:hamcrest-core:1.3" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.jmock:jmock-junit4:2.6.0" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.jmock:jmock:2.6.0" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.hamcrest:hamcrest-library:1.1" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: junit:junit-dep:4.4" level="project" />
<orderEntry type="library" name="Maven: org.eclipse.jetty.aggregate:jetty-all:9.2.6.v20141205" level="project" />
<orderEntry type="library" name="Maven: javax.websocket:javax.websocket-api:1.0" level="project" />
<orderEntry type="library" name="Maven: javax.servlet:javax.servlet-api:3.1.0" level="project" />
@ -44,5 +41,43 @@
<orderEntry type="library" name="Maven: org.xerial:sqlite-jdbc:3.8.7" level="project" />
<orderEntry type="library" name="Maven: org.slf4j:slf4j-nop:1.7.9" level="project" />
<orderEntry type="library" name="Maven: joda-time:joda-time:2.7" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.mock-server:mockserver-netty:3.10.1" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.mock-server:mockserver-client-java:3.10.1" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.apache.commons:commons-lang3:3.4" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.mock-server:mockserver-core:3.10.1" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: io.netty:netty-codec-socks:4.0.31.Final" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: com.jcraft:jzlib:1.1.3" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.bouncycastle:bcmail-jdk15on:1.52" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.bouncycastle:bcpkix-jdk15on:1.52" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: com.fasterxml.jackson.core:jackson-core:2.5.3" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: com.fasterxml.jackson.core:jackson-annotations:2.5.3" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: com.fasterxml.jackson.core:jackson-databind:2.5.3" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.skyscreamer:jsonassert:1.2.3" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.json:json:20090211" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: com.github.fge:json-schema-validator:2.2.6" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: com.google.code.findbugs:jsr305:3.0.0" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: com.googlecode.libphonenumber:libphonenumber:6.2" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: com.github.fge:json-schema-core:1.2.5" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: com.github.fge:uri-template:0.9" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: com.github.fge:msg-simple:1.1" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: com.github.fge:btf:1.2" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: com.github.fge:jackson-coreutils:1.8" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: org.mozilla:rhino:1.7R4" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: javax.mail:mailapi:1.4.3" level="project" />
<orderEntry type="library" scope="TEST" name="Maven: javax.activation:activation:1.1" level="project" />
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